
PFRMAT AL
TARGET T0088
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1wkt
W  46    W  20
R  47    K  21
I  48    Q  22
S  49    N  23
G  50    W  24
G  51    N  25
F  52    T  26
C  53    C  27
V  54    V  28
G  55    G  29
L  56    I  30
D  57    G  31
G  58    A  32
K  59    N  33
V  60    V  34
D  61    H  35
L  62    W  36
P  63    M  37
V  64    V  38
V  65    T  39
G  66    G  40
S  67    S  42
L  68    T  43
D  69    D  44
G  70    G  45
Q  71    K  46
S  72    Q  47
I  84    I  52
W  85    W  53
M  86    E  54
G  87    G  55
D  88    S  56
T  89    G  57
N  90    C  58
Y  91    V  59
S  92    G  60
R  93    R  61
G  94    S  62
T  95    T  63
A  96    T  64
M  97    M  65
S  98    P  68
G  99    A  69
N 100    N  70
S 101    T  71
W 102    C  72
E 103    C  73
N 104    N  74
V 105    I  75
F 106    N  76
S 107    T  77
G 108    G  78
W 109    F  79
C 110    Y  80
V 111    I  81
G 112    R  82
N 113    S  83
Y 114    Y  84
V 115    R  85
TER
END


