
PFRMAT AL
TARGET T0088
AUTHOR 7023-8870-2129
METHOD Since SENSER was unable to identify a relationship between the N-terminal 
METHOD domain of GafD and a sequence of known structure, we used the complete
METHOD sequence to search. PSI-Blast was able to identify a relationship between
METHOD the complete sequence of GafD and Fimc-Fimh family of proteins. We used 
METHOD clustalw to align the GafD family of sequences to the Fimc-Fimh family.
MODEL 1
PARENT 1qunB
F   4    F   1
I   5    A   2
G   6    C   3
S   7    K   4
T   8    T   5
E   9    A   6
N  10    N   7
D  11    G   8
V  12    T   9
G  13    A  10
P  14    I  11
S  15    P  12
Q  16    I  13
G  17    G  14
Y  19    G  15
S  20    G  16
S  21    S  17
T  22    A  18
H  23    N  19
A  24    V  20
M  25    Y  21
D  26    V  22
N  27    N  23
L  28    L  24
P  29    A  25
F  30    P  26
V  31    V  27
Y  32    V  28
N  33    N  29
T  34    V  30
G  35    G  31
Q  41    Q  32
N  42    N  33
A  43    L  34
N  44    V  35
V  45    V  36
W  46    D  37
R  47    L  38
I  48    S  39
S  49    T  40
G  50    Q  41
G  51    I  42
F  52    F  43
C  53    C  44
V  54    H  45
G  55    N  46
L  56    D  47
D  57    Y  48
G  58    P  49
K  59    E  50
V  60    T  51
D  61    I  52
L  62    T  53
P  63    D  54
V  64    Y  55
V  65    V  56
G  66    T  57
S  67    L  58
L  68    Q  59
D  69    R  60
G  70    G  61
S  72    S  62
I  73    A  63
Y  74    Y  64
G  75    G  65
L  76    L  68
T  77    S  69
E  78    N  70
E  79    F  71
V  80    S  72
G  81    G  73
L  82    T  74
L  83    V  75
I  84    K  76
W  85    Y  77
M  86    S  78
G  87    G  79
D  88    S  80
T  89    S  81
N  90    Y  82
Y  91    P  83
S  92    F  84
R  93    P  85
G  94    T  86
T  95    T  87
A  96    S  88
M  97    E  89
S  98    T  90
G  99    P  91
N 100    R  92
S 101    V  93
W 102    V  94
E 103    Y  95
N 104    N  96
V 105    T  99
F 106    D 100
S 107    K 101
G 108    P 102
W 109    W 103
C 110    P 104
V 111    V 105
G 112    A 106
N 113    L 107
Y 114    Y 108
V 115    L 109
S 116    T 110
T 117    A 115
Q 118    G 116
G 119    G 117
L 120    V 118
S 121    A 119
V 122    I 120
H 123    K 121
V 124    A 122
R 125    G 123
P 126    S 124
V 127    L 125
I 128    I 126
L 129    A 127
K 130    V 128
R 131    L 129
N 132    I 130
S 133    L 131
S 134    R 132
A 135    Q 133
Q 136    T 134
Y 137    N 135
S 138    N 136
V 139    Y 137
Q 140    N 138
K 141    S 139
T 142    D 140
S 143    D 141
I 144    F 142
G 145    Q 143
S 146    F 144
I 147    V 145
R 148    W 146
M 149    N 147
R 150    I 148
P 151    Y 149
Y 152    A 150
N 153    N 151
G 154    N 152
S 155    D 153
S 156    V 154
TER
END

