
PFRMAT AL
TARGET T0088
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  4
PARENT 1nfa
S 3 S 8
F 4 H 9
I 5 S 10
G 6 G 11
S 7 P 12
T 8 Y 13
E 9 E 14
N 10 L 15
D 11 R 16
V 12 I 17
G 13 E 18
P 14 V 19
S 15 Q 20
Q 16 P 21
G 17 K 22
S 18 S 23
Y 19 H 24
S 20 H 25
S 21 R 26
T 22 A 27
REMARK H 23 R 28
H 23 H 28
Y 32 Y 29
N 33 E 30
T 34 T 31
G 35 E 32
Y 36 G 33
N 37 S 34
I 38 R 35
G 39 G 36
Y 40 A 37
Q 41 V 38
N 42 K 39
A 43 A 40
N 44 S 41
S 49 A 42
G 50 G 43
G 51 G 44
F 52 H 45
P 63 P 46
V 64 I 47
V 65 V 48
S 67 Q 49
L 68 L 50
D 69 H 51
G 70 G 52
Y 74 Y 53
G 75 L 54
L 76 E 55
T 77 N 56
E 78 E 57
E 79 P 58
V 80 L 59
G 81 M 60
L 82 L 61
L 83 Q 62
I 84 L 63
W 85 F 64
M 86 I 65
G 87 G 66
D 88 D 69
T 89 D 70
N 90 R 71
Y 91 L 72
S 92 L 73
R 93 R 74
G 94 G 86
T 95 K 87
A 96 T 88
M 97 V 89
S 98 S 90
G 99 T 91
N 100 T 92
S 101 S 93
W 102 H 94
E 103 E 95
N 104 A 96
V 105 I 97
F 106 L 98
S 107 S 99
G 108 N 100
W 109 T 101
C 110 K 102
V 111 V 103
G 112 L 104
N 113 E 105
Y 114 I 106
V 115 P 107
S 116 L 108
T 117 L 109
Q 118 P 110
G 119 E 111
L 120 N 112
S 121 S 113
V 122 M 114
H 123 R 115
V 124 A 116
R 125 V 117
P 126 A 121
V 127 G 122
I 128 I 123
L 129 L 124
K 130 K 125
R 131 R 127
N 132 N 128
S 133 S 129
S 134 D 130
A 135 I 131
Q 136 E 132
Y 137 L 133
S 138 R 134
V 139 K 135
Q 140 G 136
K 141 E 137
T 142 T 138
S 143 D 139
I 144 I 140
G 145 G 141
S 146 N 144
I 147 T 145
R 148 R 146
M 149 V 147
R 150 R 148
TER
END

