
PFRMAT AL
TARGET T0089
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=40.40
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: actin
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1dkg_D
F   9     K     3 
Y  10     I     4 
T  11     I     5 
S  12     G     6 
I  13     I     7 
D  14     D     8 
I  15     L     9 
G  16     G    10 
S  17     T    11 
R  18     T    12 
Y  19     N    13 
I  20     S    14 
K  21     C    15 
V  24     V    16 
L  25     A    17 
G  26     I    18 
K  27     M    19 
R  28     D    20 
D  29     G    21 
Q  30     T    22 
E  31     T    23 
W  32     P    24 
E  33     R    25 
A  34     V    26 
L  35     L    27 
A  36     G    32 
F  37     D    33 
S  38     R    34 
S  39     T    35 
V  40     T    36 
K  41     P    37 
S  42     S    38 
R  43     Q    52 
G  44     P    53 
L  45     A    54 
D  46     K    55 
E  47     R    56 
G  48     Q    57 
E  49     A    58 
I  50     V    59 
K  51     T    60 
D  52     N    61 
A  53     P    62 
I  54     Q    63 
A  55     N    64 
F  56     T    65 
K  57     L    66 
E  58     F    67 
S  59     A    68 
V  60     I    69 
N  61     K    70 
T  62     R    71 
L  63     L    72 
L  64     I    73 
K  65     G    74 
E  66     R    75 
L  67     R    76 
E  68     F    77 
E  69     Q    78 
Q  70     D    79 
L  71     E    80 
Q  72     E    81 
K  73     V    82 
S  74     Q    83 
R  76     R    84 
S  77     D    85 
D  78     V    86 
F  79     S    87 
V  80     I    88 
I  81     M    89 
S  82     P    90 
F  83     F    91 
S  84     K    92 
S  85     I    93 
V  86     I    94 
S  87     D   100 
F  88     A   101 
E  89     W   102 
R  90     V   103 
E  91     E   104 
D  92     V   105 
I  95     K   106 
E  96     G   107 
F  99     Q   108 
G 100     K   109 
E 101     M   110 
E 102     A   111 
K 103     P   112 
R 104     P   113 
S 105     Q   114 
I 106     I   115 
T 107     S   116 
L 108     A   117 
D 109     E   118 
I 110     V   119 
L 111     L   120 
S 112     K   121 
E 113     K   122 
M 114     M   123 
Q 115     K   124 
S 116     K   125 
E 117     T   126 
A 118     A   127 
L 119     E   128 
E 120     D   129 
K 121     Y   130 
L 122     L   131 
K 123     G   132 
E 124     E   133 
N 125     P   134 
G 126     V   135 
K 127     T   136 
T 128     E   137 
P 129     A   138 
L 130     V   139 
H 131     I   140 
I 132     T   141 
F 133     V   142 
S 134     P   143 
K 135     A   144 
R 136     Y   145 
Y 137     F   146 
L 138     N   147 
D 140     D   148 
D 141     A   149 
E 142     Q   150 
R 143     R   151 
I 144     Q   152 
V 145     A   153 
F 146     T   154 
N 147     K   155 
P 148     D   156 
L 149     A   157 
D 150     G   158 
M 151     R   159 
K 152     I   160 
T 180     A   161 
V 181     G   162 
K 182     L   163 
S 183     E   164 
P 184     V   165 
F 185     K   166 
Q 186     R   167 
L 187     I   168 
K 188     I   169 
S 189     N   170 
S 190     E   171 
L 191     P   172 
V 192     T   173 
S 193     A   174 
T 194     A   175 
A 195     A   176 
E 196     L   177 
G 197     A   178 
V 198     Y   179 
L 199     G   180 
T 200     L   181 
T 201     D   182 
P 202     K   183 
K 204     G   186 
D 205     N   187 
R 206     R   188 
G 207     T   189 
V 208     I   190 
V 209     A   191 
V 210     V   192 
V 211     Y   193 
N 212     D   194 
L 213     L   195 
G 214     G   196 
Y 215     G   197 
N 216     G   198 
F 217     T   199 
T 218     F   200 
G 219     D   201 
L 220     I   202 
I 221     S   203 
A 222     I   204 
Y 223     I   205 
K 224     E   206 
N 225     I   207 
G 226     D   208 
V 227     E   209 
P 228     K   214 
I 229     T   215 
K 230     F   216 
I 231     N   222 
S 232     G   223 
Y 233     D   224 
V 234     T   225 
P 235     H   226 
V 236     L   227 
G 237     G   228 
M 238     G   229 
K 239     E   230 
H 240     D   231 
V 241     F   232 
I 242     D   233 
K 243     S   234 
D 244     R   235 
V 245     L   236 
S 246     I   237 
A 247     N   238 
V 248     Y   239 
L 249     L   240 
D 250     Q   260 
T 251     R   261 
S 252     L   262 
F 253     K   263 
E 254     E   264 
E 255     A   265 
S 256     A   266 
E 257     E   267 
R 258     K   268 
L 259     A   269 
I 260     K   270 
I 261     I   271 
T 262     E   272 
H 263     L   273 
N 269     A   276 
D 270     Q   277 
L 271     Q   278 
K 272     T   279 
E 273     D   280 
E 274     V   281 
E 275     N   282 
I 276     L   283 
Q 277     P   284 
Y 278     Y   285 
R 279     I   286 
G 280     T   287 
L 281     A   288 
D 282     D   289 
G 283     K   294 
N 284     H   295 
T 285     M   296 
I 286     N   297 
K 287     I   298 
T 288     K   299 
T 289     V   300 
T 290     T   301 
A 291     R   302 
K 292     A   303 
K 293     K   304 
L 294     L   305 
S 295     E   306 
V 296     S   307 
I 297     L   308 
I 298     V   309 
H 299     E   310 
A 300     D   311 
R 301     L   312 
L 302     V   313 
R 303     N   314 
K 308     R   315 
S 309     S   316 
K 310     I   317 
K 311     E   318 
F 312     L   319 
F 313     L   320 
R 314     K   321 
E 315     V   322 
V 316     A   323 
E 317     L   324 
A 318     Q   325 
K 319     D   326 
I 320     A   327 
V 321     G   328 
G 324     L   329 
E 325     S   330 
I 326     V   331 
G 327     S   332 
I 328     D   333 
P 329     I   334 
G 330     D   335 
G 331     D   336 
V 332     V   337 
V 333     I   338 
L 334     L   339 
T 335     V   340 
G 336     G   341 
G 337     G   342 
G 338     Q   343 
A 339     T   344 
K 340     R   345 
I 341     M   346 
P 342     P   347 
R 343     M   348 
I 344     V   349 
N 345     Q   350 
E 346     K   351 
L 347     K   352 
A 348     V   353 
T 349     A   354 
E 350     E   355 
V 351     F   356 
F 352     F   357 
K 353     G   358 
S 364     K   359 
D 365     E   360 
R 366     P   361 
P 367     R   362 
S 368     K   363 
I 369     D   364 
I 370     V   365 
N 371     N   366 
A 372     P   367 
D 373     D   368 
E 374     E   369 
V 375     A   370 
A 376     V   371 
S 380     A   372 
F 381     I   373 
A 382     G   374 
A 383     A   375 
A 384     A   376 
F 385     V   377 
G 386     Q   378 
N 387     G   379 
V 388     G   380 
F 389     V   381 
A 390     L   382 
V 391     T   383 
TER
END

