
PFRMAT AL
TARGET T0089
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.43 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1iiba
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1iib_A
D  29     K     3 
Q  30     K     4 
E  31     H     5 
W  32     I     6 
E  33     Y     7 
A  34     L     8 
L  35     F     9 
K 103     A    12 
R 104     G    13 
S 105     M    14 
I 106     S    15 
T 107     T    16 
L 108     S    17 
D 109     L    18 
I 110     L    19 
L 111     V    20 
S 112     S    21 
E 113     K    22 
M 114     M    23 
Q 115     R    24 
S 116     A    25 
E 117     Q    26 
A 118     A    27 
L 119     E    28 
E 120     K    29 
K 121     Y    30 
V 164     E    31 
V 165     V    32 
P 166     P    33 
L 167     V    34 
K 168     I    35 
V 169     I    36 
Y 170     E    37 
E 171     A    38 
M 172     F    39 
F 173     P    40 
Y 174     E    41 
N 175     T    42 
F 176     L    43 
L 177     A    44 
Q 178     G    45 
D 179     E    46 
T 180     K    47 
V 181     G    48 
K 182     Q    49 
S 183     N    50 
P 184     A    51 
G 331     D    52 
V 332     V    53 
V 333     V    54 
L 334     L    55 
T 335     L    56 
G 336     G    57 
G 337     P    58 
G 338     A    61 
A 339     Y    62 
K 340     M    63 
I 341     L    64 
P 342     P    65 
R 343     E    66 
I 344     I    67 
N 345     Q    68 
E 346     R    69 
L 347     L    70 
A 348     L    71 
T 349     P    72 
K 353     N    73 
S 354     K    74 
P 355     P    75 
V 356     V    76 
R 357     E    77 
T 358     V    78 
I 370     I    79 
N 371     D    80 
A 372     S    81 
D 373     L    82 
E 374     L    83 
V 375     Y    84 
A 376     G    85 
N 377     K    86 
D 378     V    87 
P 379     D    88 
S 380     G    89 
F 381     L    90 
A 382     G    91 
A 383     V    92 
A 384     L    93 
F 385     K    94 
G 386     A    95 
N 387     A    96 
V 388     V    97 
F 389     A    98 
A 390     A    99 
V 391     I   100 
S 392     K   101 
E 393     K   102 
N 394     A   103 
P 395     A   104 
TER
END

