
PFRMAT AL
TARGET T0089
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1bup_A
P  202 V 189
E  203 G 190
K  204 A 191
D  205 E 192
R  206 R 193
G  207 N 194
V  208 V 195
V  209 L 196
V  210 I 197
V  211 F 198
N  212 D 199
L  213 L 200
G  214 G 201
Y  215 G 202
N  216 G 203
F  217 T 204
T  218 F 205
G  219 D 206
L  220 V 207
I  221 S 208
A  222 I 209
Y  223 I 212
K  224 E 213
N  225 D 214
G  226 G 215
V  227 V 219
P  228 K 220
I  229 S 221
K  230 T 222
I  231 A 223
S  232 G 224
Y  233 D 225
V  234 T 226
P  235 H 227
V  236 L 228
G  237 G 229
M  238 G 230
K  239 E 231
H  240 D 232
V  241 F 233
I  242 D 234
K  243 K 251
D  244 D 252
V  245 I 253
S  246 S 254
A  247 R 258
V  248 A 259
L  249 V 260
D  250 R 261
T  251 R 262
S  252 L 263
F  253 R 264
E  254 T 265
E  255 A 266
S  256 C 267
E  257 E 268
R  258 R 269
L  259 A 270
I  260 K 271
I  261 R 272
T  262 T 273
H  263 L 274
G  264 S 275
N  265 S 276
L  271 S 277
K  272 T 278
E  273 Q 279
E  274 A 280
E  275 S 281
I  276 I 282
Q  277 E 283
Y  278 I 284
R  279 D 285
G  280 S 286
L  281 L 287
D  282 Y 288
G  283 E 289
N  284 G 290
T  285 I 291
I  286 D 292
K  287 T 295
T  288 S 296
T  289 I 297
T  290 T 298
A  291 R 299
K  292 A 300
K  293 R 301
L  294 F 302
S  295 E 303
V  296 E 304
I  297 L 305
I  298 N 306
H  299 A 307
A  300 D 308
R  301 L 309
L  302 F 310
R  303 R 311
E  304 G 312
I  305 T 313
M  306 L 314
S  307 D 315
K  308 P 316
S  309 V 317
K  310 E 318
K  311 K 319
F  312 A 320
F  313 L 321
R  314 R 322
E  315 D 323
A  318 A 324
K  319 K 325
I  320 L 326
V  321 D 327
E  322 K 328
E  323 S 329
I  328 Q 330
P  329 I 331
G  330 H 332
G  331 D 333
V  332 I 334
V  333 V 335
L  334 L 336
T  335 V 337
G  336 G 338
G  337 G 339
G  338 S 340
A  339 T 341
K  340 R 342
I  341 I 343
P  342 P 344
R  343 K 345
I  344 I 346
N  345 Q 347
E  346 K 348
L  347 L 349
A  348 L 350
T  349 Q 351
E  350 D 352
V  351 F 353
F  352 F 354
K  353 N 355
N  363 G 356
S  364 K 357
D  365 E 358
R  366 L 359
P  367 N 360
S  368 K 361
I  369 S 362
I  370 I 363
N  371 N 364
A  372 P 365
D  373 D 366
E  374 E 367
V  375 A 368
A  376 V 369
S  380 A 370
F  381 Y 371
A  382 G 372
A  383 A 373
A  384 A 374
F  385 V 375
G  386 Q 376
N  387 A 377
V  388 A 378
F  389 I 379
A  390 L 380
V  391 S 381
TER
END

