
PFRMAT AL
TARGET T0089
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1bup_A
V    8 G 4
F    9 P 5
Y   10 A 6
T   11 V 7
S   12 G 8
I   13 I 9
D   14 D 10
I   15 L 11
G   16 G 12
S   17 S 13
R   18 T 14
Y   19 Y 15
I   20 S 16
K   21 C 17
V   24 V 18
L   25 G 19
G   26 V 20
K   27 F 21
R   28 Q 22
D   29 H 23
Q   30 G 24
E   31 K 25
W   32 V 26
E   33 E 27
A   34 I 28
L   35 I 29
A   36 G 34
F   37 N 35
S   38 R 36
S   39 T 37
V   40 T 38
K   41 P 39
S   42 S 40
R   43 D 53
G   44 A 54
L   45 A 55
D   46 K 56
E   47 N 57
G   48 Q 58
E   49 V 59
I   50 A 60
K   51 M 61
D   52 N 62
A   53 P 63
I   54 T 64
A   55 N 65
F   56 T 66
K   57 V 67
E   58 F 68
S   59 D 69
V   60 A 70
N   61 K 71
T   62 R 72
L   63 L 73
L   64 I 74
K   65 G 75
E   66 R 76
L   67 R 77
E   68 F 78
E   69 A 81
Q   70 V 82
L   71 V 83
Q   72 Q 84
K   73 S 85
S   74 D 86
L   75 M 87
R   76 K 88
S   77 H 89
D   78 P 91
F   79 F 92
V   80 M 93
I   81 V 94
S   82 V 95
F   83 N 96
S   84 D 97
S   85 A 98
V   86 G 99
D   92 R 100
T   93 P 101
V   94 K 102
I   95 V 103
E   96 Q 104
R   97 V 105
D   98 E 106
F   99 Y 107
G  100 K 108
E  101 G 109
E  102 E 110
K  103 T 111
R  104 K 112
S  105 S 113
I  106 F 114
T  107 Y 115
L  108 P 116
D  109 E 117
I  110 E 118
L  111 V 119
S  112 S 120
E  113 S 121
M  114 M 122
Q  115 V 123
S  116 L 124
E  117 T 125
A  118 K 126
L  119 M 127
R  143 K 128
I  144 E 129
V  145 I 130
F  146 A 131
N  147 E 132
P  148 A 133
K  152 Y 134
A  153 L 135
S  154 G 136
K  155 K 137
I  156 T 138
I  158 V 139
E  159 T 140
Y  160 N 141
T  161 A 142
S  162 V 143
I  163 V 144
V  164 T 145
V  165 V 146
P  166 P 147
L  167 A 148
K  168 Y 149
V  169 F 150
Y  170 N 151
E  171 D 152
M  172 S 153
F  173 Q 154
Y  174 R 155
N  175 Q 156
F  176 A 157
L  177 T 158
Q  178 K 159
D  179 D 160
T  180 A 165
V  181 G 166
K  182 L 167
S  183 N 168
P  184 V 169
F  185 L 170
Q  186 R 171
L  187 I 172
K  188 I 173
S  189 N 174
S  190 E 175
L  191 P 176
V  192 T 177
S  193 A 178
T  194 A 179
A  195 A 180
E  196 I 181
G  197 A 182
V  198 Y 183
L  199 G 184
T  200 L 185
T  201 D 186
P  202 K 187
E  203 K 188
TER
END

