
PFRMAT AL
TARGET T0089
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1dkg_D
F    9 K 3
Y   10 I 4
T   11 I 5
S   12 G 6
I   13 I 7
D   14 D 8
I   15 L 9
G   16 G 10
S   17 T 11
R   18 T 12
Y   19 N 13
I   20 S 14
K   21 C 15
G   22 V 16
L   23 A 17
V   24 I 18
L   25 M 19
G   26 D 20
K   27 G 21
R   28 T 22
D   29 T 23
Q   30 P 24
E   31 R 25
W   32 V 26
E   33 N 29
A   34 A 30
L   35 E 31
A   36 G 32
F   37 D 33
S   38 R 34
S   39 T 35
V   40 T 36
K   41 P 37
S   42 S 38
R   43 Q 52
G   44 P 53
L   45 A 54
D   46 K 55
E   47 R 56
G   48 Q 57
E   49 A 58
I   50 V 59
K   51 T 60
D   52 N 61
A   53 P 62
I   54 Q 63
A   55 N 64
F   56 T 65
K   57 L 66
E   58 F 67
S   59 A 68
V   60 I 69
N   61 K 70
T   62 R 71
L   63 L 72
L   64 I 73
K   65 G 74
E   66 R 75
L   67 R 76
E   68 F 77
E   69 Q 78
Q   70 D 79
L   71 E 80
Q   72 E 81
K   73 V 82
S   74 Q 83
R   76 R 84
S   77 D 85
D   78 V 86
F   79 S 87
V   80 I 88
I   81 M 89
S   82 P 90
F   83 F 91
S   84 K 92
S   85 I 93
V   86 I 94
S   87 A 95
F   88 A 96
E   89 D 97
R   90 N 98
E   91 D 100
D   92 A 101
T   93 W 102
V   94 V 103
I   95 E 104
E   96 V 105
R   97 K 106
D   98 G 107
F   99 Q 108
G  100 K 109
E  101 M 110
E  102 A 111
K  103 P 112
R  104 P 113
S  105 Q 114
I  106 I 115
T  107 S 116
L  108 A 117
D  109 E 118
I  110 V 119
L  111 L 120
S  112 K 121
E  113 K 122
M  114 M 123
Q  115 K 124
S  116 K 125
E  117 T 126
A  118 A 127
L  119 E 128
E  120 D 129
K  121 Y 130
L  122 L 131
K  123 G 132
E  124 E 133
N  125 P 134
G  126 V 135
K  127 T 136
T  128 E 137
T  161 A 138
S  162 V 139
I  163 I 140
V  164 T 141
V  165 V 142
P  166 P 143
L  167 A 144
K  168 Y 145
V  169 F 146
Y  170 N 147
E  171 D 148
M  172 A 149
F  173 Q 150
Y  174 R 151
N  175 Q 152
F  176 A 153
L  177 T 154
Q  178 K 155
D  179 D 156
T  180 A 157
V  181 G 162
K  182 L 163
S  183 E 164
P  184 V 165
F  185 K 166
Q  186 R 167
L  187 I 168
K  188 I 169
S  189 N 170
S  190 E 171
L  191 P 172
V  192 T 173
S  193 A 174
T  194 A 175
A  195 A 176
E  196 L 177
G  197 A 178
V  198 Y 179
L  199 G 180
T  200 L 181
T  201 D 182
P  202 K 183
E  203 T 185
K  204 G 186
D  205 N 187
R  206 R 188
G  207 T 189
V  208 I 190
V  209 A 191
V  210 V 192
V  211 Y 193
N  212 D 194
L  213 L 195
G  214 G 196
Y  215 G 197
N  216 G 198
F  217 T 199
T  218 F 200
G  219 D 201
L  220 I 202
I  221 S 203
A  222 I 204
Y  223 I 205
K  224 E 206
N  225 F 216
G  226 E 217
V  227 V 218
P  228 L 219
I  229 A 220
K  230 T 221
I  231 N 222
S  232 G 223
Y  233 D 224
V  234 T 225
P  235 H 226
V  236 L 227
G  237 G 228
M  238 G 229
K  239 E 230
H  240 D 231
V  241 F 232
I  242 D 233
K  243 S 234
D  244 R 235
V  245 L 236
S  246 I 237
A  247 N 238
V  248 Y 239
L  249 L 240
D  250 Q 260
T  251 R 261
S  252 L 262
F  253 K 263
E  254 E 264
E  255 A 265
S  256 A 266
E  257 E 267
R  258 K 268
L  259 A 269
I  260 K 270
I  261 I 271
T  262 E 272
H  263 L 273
G  264 S 274
N  265 S 275
A  266 A 276
D  270 Q 277
L  271 Q 278
K  272 T 279
E  273 D 280
E  274 V 281
E  275 N 282
I  276 L 283
Q  277 P 284
Y  278 Y 285
R  279 I 286
G  280 T 287
L  281 A 288
D  282 D 289
G  283 A 290
N  284 T 291
T  285 G 292
I  286 P 293
K  287 K 294
T  288 H 295
T  289 M 296
T  290 N 297
A  291 I 298
K  292 K 299
K  293 V 300
L  294 T 301
S  295 R 302
V  296 A 303
I  297 K 304
I  298 L 305
H  299 E 306
A  300 S 307
R  301 L 308
L  302 V 309
R  303 E 310
E  304 D 311
I  305 L 312
M  306 V 313
S  307 N 314
K  308 R 315
S  309 S 316
K  310 I 317
K  311 E 318
F  312 L 319
F  313 L 320
R  314 K 321
E  315 V 322
V  316 A 323
E  317 L 324
A  318 Q 325
K  319 D 326
I  320 A 327
E  323 G 328
G  324 L 329
E  325 S 330
I  326 V 331
G  327 S 332
I  328 D 333
P  329 I 334
G  330 D 335
G  331 D 336
V  332 V 337
V  333 I 338
L  334 L 339
T  335 V 340
G  336 G 341
G  337 G 342
G  338 Q 343
A  339 T 344
K  340 R 345
I  341 M 346
P  342 P 347
R  343 M 348
I  344 V 349
N  345 Q 350
E  346 K 351
L  347 K 352
A  348 V 353
T  349 A 354
E  350 E 355
V  351 F 356
F  352 F 357
K  353 G 358
S  354 K 359
D  365 E 360
R  366 P 361
P  367 R 362
S  368 K 363
I  369 D 364
I  370 V 365
N  371 N 366
A  372 P 367
D  373 D 368
E  374 E 369
A  382 A 370
A  383 V 371
A  384 A 372
F  385 I 373
G  386 G 374
N  387 A 375
V  388 A 376
F  389 V 377
A  390 Q 378
V  391 G 379
S  392 G 380
E  393 V 381
N  394 L 382
P  395 T 383
TER
END

