
PFRMAT AL
TARGET T0090
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1rrp_B
M    1 V 22
L    2 P 23
K    3 L 24
P    4 P 25
D    5 D 26
N    6 K 27
L    7 I 28
P    8 E 29
V    9 V 30
T   10 K 31
F   11 T 32
G   12 G 33
K   13 E 34
N   14 E 35
D   15 D 36
R   21 E 37
E   22 E 38
T   23 E 39
L   24 F 40
Y   25 F 41
R   26 C 42
G   27 N 43
F   28 R 44
F   29 A 45
S   30 K 46
L   31 L 47
H   38 F 48
R   39 R 49
F   41 F 50
N   42 D 51
G   43 V 52
Q   44 E 53
M   45 S 54
S   46 K 55
H   47 E 56
E   48 W 57
V   49 K 58
R   50 E 59
R   51 R 60
E   52 G 61
I   53 I 62
H   58 G 63
A   59 N 64
A   60 V 65
V   61 K 66
L   62 I 67
L   63 L 68
P   64 R 69
F   65 H 70
D   66 K 71
P   67 T 72
V   68 S 73
R   69 G 74
D   70 K 75
E   71 I 76
V   72 R 77
V   73 L 78
L   74 L 79
I   75 M 80
E   76 R 81
Q   77 R 82
I   78 E 83
R   79 Q 84
I   80 V 85
A   81 T 101
A   82 P 102
Y   83 N 103
D   84 A 104
T   85 G 105
S   86 S 106
E   87 D 107
T   88 R 108
P   89 S 109
W   90 F 110
L   91 V 111
L   92 W 112
E   93 H 113
M   94 A 114
V   95 L 115
A   96 A 118
G   97 D 119
M   98 E 120
I   99 L 121
E  100 P 122
E  101 K 123
G  102 P 124
E  103 E 125
S  104 T 133
V  105 P 134
E  106 E 135
D  107 E 136
V  108 A 137
A  109 A 138
R  110 L 139
R  111 C 142
E  112 K 143
A  113 F 144
I  114 E 145
E  115 E 146
E  116 A 147
A  117 Q 148
G  118 S 149
L  119 I 150
TER
END

