
PFRMAT AL
TARGET T0090
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1p32_A
L    7 M 74
P    8 H 75
V    9 T 76
T   10 D 77
F   11 G 78
G   12 D 79
K   13 K 80
N   14 A 81
D   15 F 82
V   16 V 83
E   17 D 84
I   18 F 85
I   19 L 86
A   20 S 87
R   21 D 88
E   22 E 89
T   23 I 90
L   24 K 91
Y   25 E 92
S   30 E 93
L   31 R 94
D   32 K 95
L   33 I 96
Y   34 Q 97
R   35 K 98
R   39 H 99
L   40 K 100
F   41 T 101
N   42 L 102
G   43 P 103
Q   44 K 104
M   45 M 105
S   46 S 106
H   47 G 107
E   48 G 108
V   49 W 109
E   52 E 110
I   53 L 111
E   55 E 112
R   56 L 113
G   57 N 114
H   58 G 115
A   59 T 116
A   60 E 117
V   61 A 118
L   62 K 119
L   63 L 120
P   64 V 121
F   65 R 122
D   66 K 123
V   68 V 124
R   69 A 125
D   70 G 126
E   71 E 127
V   72 K 128
V   73 I 129
L   74 T 130
I   75 V 131
E   76 T 132
Q   77 N 134
I   78 I 135
R   79 N 136
I   80 N 137
A   81 S 138
A   82 I 139
Y   83 P 140
D   84 L 162
T   85 T 163
S   86 S 164
E   87 T 165
T   88 P 166
P   89 N 167
W   90 F 168
L   91 V 169
L   92 V 170
E   93 E 171
G  118 V 172
L  119 I 173
I  120 K 174
V  121 N 175
K  122 D 176
R  123 D 177
T  124 G 178
K  125 K 179
P  126 K 180
V  127 A 181
L  128 L 182
S  129 V 183
F  130 L 184
L  131 D 185
A  132 C 186
S  133 H 187
P  134 P 189
G  135 E 190
G  136 D 197
T  137 E 198
S  138 A 199
E  139 E 200
R  140 S 201
S  141 D 202
S  142 I 203
I  143 F 204
M  144 S 205
V  145 I 206
G  146 R 207
E  147 E 208
V  148 V 209
A  150 S 210
T  151 F 211
T  152 Q 212
A  153 S 213
S  154 T 214
G  155 G 215
I  156 E 216
H  157 S 217
G  158 E 218
L  159 W 219
A  160 K 220
D  161 D 221
E  162 T 222
N  163 N 223
E  164 Y 224
D  165 T 225
I  166 L 226
R  167 N 227
V  168 T 228
H  169 D 232
V  170 W 233
V  171 A 234
S  172 L 235
R  173 Y 236
E  174 D 237
Q  175 H 238
A  176 L 239
Y  177 M 240
Q  178 D 241
W  179 F 242
V  180 L 243
E  181 A 244
E  182 D 245
G  183 R 246
K  184 G 247
I  185 V 248
D  186 D 249
N  187 N 250
A  188 A 253
A  189 D 254
S  190 E 255
V  191 L 256
I  192 V 257
A  193 E 258
L  194 L 259
Q  195 T 270
W  196 F 271
L  197 L 272
Q  198 E 273
L  199 D 274
H  200 L 275
H  201 K 276
Q  202 S 277
A  203 F 278
L  204 V 279
K  205 K 280
N  206 S 281
E  207 Q 282
TER
END

