
PFRMAT SS
TARGET T0090
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.98
L C 0.84
K C 0.83
P C 0.83
D C 0.78
N C 0.79
L C 0.89
P C 0.88
V C 0.85
T C 0.90
F C 0.62
G C 0.82
K C 0.58
N C 0.48
D C 0.18
V E 0.54
E E 0.77
I E 0.76
I E 0.54
A E 0.67
R E 0.62
E E 0.48
T E 0.58
L E 0.48
Y E 0.56
R C 0.68
G C 0.85
F E 0.81
F E 0.93
S E 0.95
L E 0.96
D E 0.95
L E 0.92
Y E 0.94
R E 0.94
F E 0.92
R E 0.90
H E 0.88
R E 0.69
L C 0.20
F C 0.54
N C 0.78
G C 0.88
Q C 0.83
M C 0.58
S C 0.57
H C 0.52
E E 0.58
V E 0.90
R E 0.89
R E 0.95
E E 0.95
I E 0.95
F E 0.76
E C 0.51
R C 0.91
G C 0.96
H C 0.76
A E 0.43
A E 0.85
V E 0.94
L E 0.94
L E 0.95
P E 0.93
F E 0.94
D E 0.22
P C 0.90
V C 0.94
R C 0.93
D C 0.95
E E 0.85
V E 0.94
V E 0.93
L E 0.96
I E 0.95
E E 0.91
Q E 0.71
I C 0.54
R C 0.60
I C 0.57
A C 0.78
A C 0.77
Y C 0.86
D C 0.78
T C 0.80
S C 0.89
E C 0.56
T C 0.87
P C 0.90
W E 0.86
L E 0.87
L E 0.92
E E 0.91
M E 0.81
V C 0.93
A C 0.91
G C 0.79
M E 0.34
I E 0.68
E C 0.85
E C 0.89
G C 0.89
E C 0.92
S C 0.95
V H 0.83
E H 0.91
D H 0.93
V H 0.94
A H 0.95
R H 0.94
R H 0.95
E H 0.95
A H 0.95
I H 0.93
E H 0.90
E H 0.60
A H 0.14
G C 0.89
L C 0.92
I C 0.32
V C 0.59
K C 0.58
R E 0.10
T E 0.66
K E 0.86
P E 0.94
V E 0.84
L E 0.91
S E 0.96
F E 0.94
L E 0.61
A E 0.26
S C 0.81
P C 0.89
G C 0.92
G C 0.90
T C 0.89
S C 0.59
E C 0.44
R E 0.65
S E 0.92
S E 0.93
I E 0.95
M E 0.94
V E 0.94
G E 0.94
E E 0.70
V C 0.64
D C 0.76
A C 0.30
T C 0.04
T C 0.12
A C 0.04
S C 0.36
G C 0.80
I C 0.81
H C 0.79
G C 0.82
L C 0.80
A C 0.80
D C 0.92
E C 0.86
N C 0.91
E C 0.69
D E 0.81
I E 0.72
R E 0.75
V E 0.84
H E 0.85
V E 0.73
V E 0.12
S C 0.56
R H 0.94
E H 0.95
Q H 0.95
A H 0.95
Y H 0.92
Q H 0.91
W H 0.93
V H 0.90
E H 0.63
E C 0.84
G C 0.92
K C 0.92
I C 0.92
D C 0.91
N C 0.86
A H 0.70
A H 0.88
S H 0.92
V H 0.94
I H 0.95
A H 0.95
L H 0.96
Q H 0.95
W H 0.95
L H 0.95
Q H 0.94
L H 0.94
H H 0.93
H H 0.93
Q H 0.91
A H 0.92
L H 0.79
K H 0.02
N C 0.16
E C 0.34
W C 0.45
A C 0.98
END

