
PFRMAT SS
TARGET T0090
AUTHOR 3878-6624-7634
REMARK -
METHOD Neural networks trained on latest version of pdb
METHOD See:
METHOD Prediction of protein secondary structure at 80 accuracy
METHOD Thomas Nordahl Petersen, Claus Lundegaard, Morten Nielsen,
METHOD Henrik Bohr, Jakob Bohr, Soren Brunak, Garry P. Gippert,
METHOD Ole Lund, Proteins, in press
MODEL 1
M C  0.99
L C  0.89
K C  0.92
P C  0.92
D C  0.89
N C  0.88
L C  0.92
P C  0.89
V C  0.85
T C  0.81
F C  0.85
G C  0.90
K C  0.68
N C  0.71
D C  0.56
V E  0.48
E E  0.63
I E  0.70
I E  0.59
A E  0.41
R C  0.41
E C  0.46
T C  0.49
L C  0.56
Y C  0.60
R C  0.73
G C  0.76
F E  0.54
F E  0.78
S E  0.77
L E  0.71
D E  0.64
L E  0.57
Y E  0.54
R E  0.48
F E  0.49
R E  0.66
H E  0.78
R E  0.73
L C  0.61
F C  0.84
N C  0.91
G C  0.92
Q C  0.75
M E  0.47
S C  0.61
H C  0.54
E C  0.44
V C  0.42
R C  0.45
R E  0.42
E E  0.50
I E  0.52
F E  0.47
E C  0.61
R C  0.87
G C  0.93
H C  0.88
A E  0.53
A E  0.84
V E  0.97
L E  0.98
L E  0.96
P E  0.93
F E  0.90
D E  0.58
P C  0.92
V C  0.94
R C  0.95
D C  0.96
E E  0.60
V E  0.96
V E  0.97
L E  0.98
I E  0.96
E E  0.90
Q E  0.78
I E  0.57
R C  0.64
I C  0.68
A C  0.73
A C  0.66
Y C  0.61
D C  0.65
T C  0.65
S C  0.72
E C  0.79
T C  0.84
P C  0.74
W E  0.61
L E  0.81
L E  0.86
E E  0.77
M C  0.57
V C  0.75
A C  0.79
G C  0.69
M C  0.54
I C  0.59
E C  0.83
E C  0.95
G C  0.98
E C  0.97
S C  0.96
V H  0.91
E H  0.96
D H  0.98
V H  0.98
A H  0.98
R H  0.98
R H  0.98
E H  0.97
A H  0.96
I H  0.94
E H  0.91
E H  0.79
A C  0.49
G C  0.93
L C  0.86
I C  0.55
V C  0.47
K C  0.48
R C  0.45
T E  0.64
K E  0.84
P E  0.89
V E  0.84
L E  0.83
S E  0.80
F E  0.68
L C  0.57
A C  0.83
S C  0.93
P C  0.94
G C  0.96
G C  0.94
T C  0.90
S C  0.86
E C  0.76
R E  0.68
S E  0.88
S E  0.96
I E  0.98
M E  0.98
V E  0.98
G E  0.97
E E  0.92
V E  0.68
D C  0.74
A C  0.88
T C  0.69
T E  0.60
A E  0.64
S E  0.48
G C  0.71
I C  0.81
H C  0.77
G C  0.75
L C  0.78
A C  0.85
D C  0.90
E C  0.91
N C  0.91
E C  0.87
D C  0.61
I E  0.69
R E  0.80
V E  0.91
H E  0.93
V E  0.87
V C  0.52
S C  0.92
R H  0.91
E H  0.95
Q H  0.96
A H  0.98
Y H  0.98
Q H  0.98
W H  0.97
V H  0.92
E H  0.79
E C  0.55
G C  0.79
K C  0.83
I C  0.66
D C  0.63
N C  0.50
A H  0.80
A H  0.89
S H  0.95
V H  0.98
I H  0.98
A H  0.98
L H  0.99
Q H  0.98
W H  0.98
L H  0.97
Q H  0.93
L H  0.86
H H  0.79
H H  0.75
Q H  0.89
A H  0.87
L H  0.82
K H  0.71
N H  0.58
E C  0.56
W C  0.74
A C  1.00
END

--
Claus Lundegaard, M.Sc., Ph.D.          Computational Scientist
Structural Bioinformatics               Tel:  +45 4516 2806
Advanced Technologies                   Fax:  +45 4516 2802
Agern All 3                            clundegaard@strubix.dk
DK-2970 Hrsholm                        http://www.strubix.com




