
PFRMAT AL
TARGET T0090
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1mup
D    5 E 5
N    6 E 6
L    7 A 7
P    8 S 8
V    9 S 9
T   10 T 10
F   11 G 11
G   12 R 12
K   13 N 13
N   14 F 14
D   15 N 15
V   16 V 16
E   17 E 17
I   18 K 18
I   19 I 19
A   20 N 20
R   21 G 21
E   22 E 22
F   28 W 23
F   29 H 24
S   30 T 25
L   31 I 26
D   32 I 27
L   33 L 28
Y   34 S 30
R   35 D 31
F   36 K 32
R   37 R 33
H   38 E 34
R   39 K 35
L   40 I 36
F   41 E 37
N   42 D 38
G   43 N 39
Q   44 G 40
M   45 N 41
S   46 F 42
H   47 R 43
E   48 L 44
V   49 F 45
R   50 L 46
R   51 E 47
E   52 Q 48
I   53 I 49
F   54 H 50
E   55 V 51
R   56 L 52
G   57 E 53
H   58 N 54
A   59 S 55
A   60 L 56
V   61 V 57
L   62 L 58
L   63 T 62
P   64 V 63
F   65 R 64
D   66 D 65
P   67 E 66
V   68 E 67
R   69 C 68
D   70 S 69
E   71 E 70
V   72 L 71
V   73 S 72
L   74 M 73
I   75 V 74
E   76 K 77
Q   77 T 78
I   78 E 79
R   79 K 80
I   80 A 81
A   81 G 82
A   82 E 83
Y   83 Y 84
D   84 S 85
T   85 V 86
S   86 T 87
E   87 Y 88
T   88 D 89
P   89 G 90
W   90 F 91
L   91 T 93
L   92 F 94
E   93 T 95
M   94 I 96
V   95 P 97
A   96 K 98
G   97 T 99
M   98 D 100
I   99 Y 101
E  100 D 102
E  101 N 103
G  102 G 115
E  103 E 116
S  104 T 117
V  105 P 128
E  106 D 129
D  107 D 133
V  108 I 134
A  109 K 135
R  110 E 136
R  111 R 137
E  112 Q 140
A  113 L 141
I  114 C 142
E  115 E 143
E  116 E 144
A  117 H 145
G  118 G 146
L  119 I 147
I  120 L 148
V  121 R 149
K  122 E 150
R  123 N 151
T  124 I 152
K  125 I 153
P  126 D 154
V  127 L 155
A  132 S 156
S  133 N 157
P  134 A 158
G  135 N 159
G  136 R 160
T  137 C 161
TER
END

