
PFRMAT AL                                                                        
TARGET T0090                                                                     
REMARK =========================================================================
AUTHOR 6923-1755-6564                                                           
REMARK Ralf Zimmer, GMD-SCAI,                                                   
REMARK Theo Mevissen, GMD-SCAI,                                                 
REMARK Thomas Lengauer, GMD-SCAI,                                               
REMARK German National Research Center for Information Technology               
REMARK Institute for Algorithms and Scientific Computing                        
REMARK =========================================================================
METHOD A reduced candidate list is produced via ToPLign [1]                     
METHOD sequence/profile alignments, 123D [2] and RDP [3].                       
METHOD The top scoring candidates from this list and the                        
METHOD corresponding refined alignments have been produced                      
METHOD with RDP [3] using newly derived modifications of                        
METHOD contact capacity [2] and pair interaction potentials.                    
METHOD References:                                                              
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer:  
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign",
METHOD     GMD, 1994-98.                                                        
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:                   
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment   
METHOD     and Contact Capacity Potentials",                                    
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publ. Co.,    
METHOD     1996, 53--72.                                                        
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:                     
METHOD     "Recursive Dynamic Programming for Adaptive Sequence                 
METHOD     and Structure Alignment",                                            
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.            
REMARK =========================================================================
MODEL  1                                                                         
PARENT 1TUM                                                                      
L  24    M     1                                                                 
Y  25    K     2                                                                 
R  26    K     3                                                                 
G  27    L     4                                                                 
F  28    Q     5                                                                 
F  29    I     6                                                                 
S  30    A     7                                                                 
L  31    V     8                                                                 
D  32    G     9                                                                 
L  33    I    10                                                                 
Y  34    I    11                                                                 
R  35    R    12                                                                 
H  58    N    15                                                                 
A  59    N    16                                                                 
A  60    E    17                                                                 
V  61    I    18                                                                 
L  62    F    19                                                                 
L  63    I    20                                                                 
P  64    T    21                                                                 
F  65    R    22                                                                 
D  66    R    23                                                                 
T  85    D    26                                                                 
S  86    A    27                                                                 
E  87    H    28                                                                 
T  88    M    29                                                                 
P  89    A    30                                                                 
L  91    K    32                                                                 
L  92    L    33                                                                 
E  93    E    34                                                                 
M  94    F    35                                                                 
V  95    P    36                                                                 
A  96    G    37                                                                 
G  97    G    38                                                                 
M  98    K    39                                                                 
I  99    I    40                                                                 
E 100    E    41                                                                 
E 101    M    42                                                                 
G 102    G    43                                                                 
E 103    E    44                                                                 
S 104    T    45                                                                 
V 105    P    46                                                                 
E 106    E    47                                                                 
D 107    Q    48                                                                 
V 108    A    49                                                                 
A 109    V    50                                                                 
R 110    V    51                                                                 
R 111    R    52                                                                 
E 112    E    53                                                                 
A 113    L    54                                                                 
I 114    Q    55                                                                 
E 115    E    56                                                                 
E 116    E    57                                                                 
A 117    V    58                                                                 
G 118    G    59                                                                 
L 119    I    60                                                                 
K 125    Q    63                                                                 
P 126    H    64                                                                 
V 127    F    65                                                                 
L 128    S    66                                                                 
S 129    L    67                                                                 
F 130    F    68                                                                 
L 131    E    69                                                                 
A 132    K    70                                                                 
S 133    L    71                                                                 
P 134    E    72                                                                 
G 135    Y    73                                                                 
G 136    E    74                                                                 
T 137    F    75                                                                 
S 138    P    76                                                                 
E 139    D    77                                                                 
R 140    R    78                                                                 
S 141    H    79                                                                 
S 142    I    80                                                                 
I 143    T    81                                                                 
M 144    L    82                                                                 
V 145    W    83                                                                 
G 146    F    84                                                                 
E 147    W    85                                                                 
V 148    L    86                                                                 
D 149    V    87                                                                 
G 158    E    88                                                                 
L 159    R    89                                                                 
R 167    G    92                                                                 
V 168    E    93                                                                 
H 169    P    94                                                                 
V 170    W    95                                                                 
V 171    G    96                                                                 
S 172    K    97                                                                 
R 173    E    98                                                                 
E 174    G    99                                                                 
Q 175    Q   100                                                                 
A 176    P   101                                                                 
Y 177    G   102                                                                 
Q 178    E   103                                                                 
W 179    W   104                                                                 
V 180    M   105                                                                 
E 181    S   106                                                                 
E 182    L   107                                                                 
G 183    V   108                                                                 
K 184    G   109                                                                 
I 185    L   110                                                                 
D 186    N   111                                                                 
N 187    A   112                                                                 
A 188    D   113                                                                 
A 189    D   114                                                                 
S 190    F   115                                                                 
V 191    P   116                                                                 
I 192    P   117                                                                 
A 193    A   118                                                                 
L 194    N   119                                                                 
Q 195    E   120                                                                 
W 196    P   121                                                                 
L 197    V   122                                                                 
Q 198    I   123                                                                 
L 199    A   124                                                                 
H 200    K   125                                                                 
H 201    L   126                                                                 
Q 202    K   127                                                                 
A 203    R   128                                                                 
L 204    L   129                                                                 
TER                                                                              
END                                                                              



