
PFRMAT AL
TARGET T0092
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=9.91 
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1xvaa
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1xva_A
M   1     V     4
V   2     Y     5
K   3     R     6
D   4     T     7
T   5     R     8
L   6     S     9
F   7     L    10
S   8     G    11
T   9     V    12
P  10     A    13
I  11     A    14
A  12     E    15
K  13     G    16
L  14     I    17
G  15     P    18
D  16     D    19
F  17     Q    20
I  18     Y    21
F  19     A    22
D  20     D    23
E  21     G    24
N  22     E    25
V  23     A    26
A  24     A    27
E  25     R    28
V  26     V    29
F  27     W    30
P  28     Q    31
D  29     L    32
M  30     Y    33
I  31     I    34
Q  32     G    35
R  33     D    36
S  34     T    37
V  35     R    38
P  36     S    39
S  39     R    40
N  40     T    41
I  41     A    42
I  42     E    43
T  43     Y    44
A  44     K    45
I  45     A    46
G  46     W    47
M  47     L    48
L  48     L    49
A  49     G    50
E  50     L    51
R  51     L    52
F  52     R    53
V  53     Q    54
T  54     H    55
A  55     G    56
D  56     C    57
S  57     H    58
N  58     R    59
V  59     V    60
Y  60     L    61
D  61     D    62
L  62     V    63
G  63     A    64
C  64     C    65
S  65     G    66
R  66     T    67
G  67     G    68
A  68     V    69
A  69     D    70
T  70     S    71
L  71     I    72
S  72     M    73
A  73     L    74
R  74     V    75
R  75     E    76
N  76     E    77
N  81     G    78
V  82     F    79
K  83     S    80
I  84     V    81
I  85     T    82
G  86     S    83
I  87     V    84
D  88     D    85
N  89     A    86
S  90     S    87
Q  91     D    88
P  92     K    89
M  93     M    90
V  94     L    91
E  95     K    92
R  96     Y    93
C  97     A    94
R  98     L    95
Q  99     K    96
H 100     E    97
I 101     R    98
A 102     W    99
A 103     N   100
Y 104     R   101
H 105     R   102
S 106     K   103
E 107     E   104
I 108     P   105
P 109     A   106
V 110     F   107
E 111     D   108
I 112     I   112
L 113     E   113
C 114     E   114
N 115     A   115
D 116     N   116
I 117     W   117
R 118     L   118
H 119     T   119
V 120     L   120
E 121     D   121
I 122     K   122
K 123     D   123
N 124     V   124
A 125     P   125
S 126     A   126
M 127     G   127
V 128     D   128
I 129     G   129
L 130     F   130
N 131     D   131
F 132     A   132
T 133     V   133
L 134     I   134
Q 135     C   135
F 136     L   136
L 137     G   137
P 138     N   138
P 139     Q   150
E 140     S   151
D 141     E   152
R 142     H   153
I 143     R   154
A 144     L   155
L 145     A   156
L 146     L   157
T 147     K   158
K 148     N   159
I 149     I   160
Y 150     A   161
E 151     S   162
G 152     M   163
L 153     V   164
N 154     R   165
P 155     P   166
N 156     G   167
G 157     G   168
V 158     L   169
L 159     L   170
V 160     V   171
L 161     I   172
S 162     D   173
E 163     H   174
K 164     Y   177
F 165     D   178
R 166     Y   179
F 167     I   180
E 168     L   181
D 169     S   182
T 170     T   183
K 171     G   184
I 172     C   185
N 173     A   186
H 174     P   187
L 175     P   188
L 176     G   189
I 177     K   190
D 178     N   191
L 179     I   192
H 180     Y   193
H 181     Y   194
Q 182     K   195
F 183     S   196
K 184     D   197
R 185     L   198
A 186     T   199
N 187     K   200
G 188     D   201
Y 189     I   202
S 190     T   203
E 191     T   204
L 192     S   205
E 193     V   206
V 194     L   207
S 195     T   208
Q 196     V   209
K 197     N   210
R 198     N   211
T 199     K   212
A 200     A   213
L 201     H   214
E 202     M   215
N 203     V   216
V 204     T   217
M 205     L   218
R 206     D   219
T 207     Y   220
D 208     T   221
S 209     V   222
I 210     Q   223
E 211     V   224
T 212     P   225
H 213     G   226
K 214     A   227
V 215     G   228
R 216     R   229
L 217     D   230
K 218     G   231
N 219     A   232
V 220     P   233
G 221     G   234
F 222     F   235
S 223     S   236
Q 224     K   237
V 225     F   238
E 226     R   239
L 227     L   240
W 228     S   241
F 229     Y   242
Q 230     Y   243
C 231     P   244
F 232     H   245
N 233     C   246
F 234     L   247
G 235     A   248
S 236     S   249
M 237     F   250
I 238     T   251
A 239     E   252
V 240     L   253
K 241     V   254
TER
END

