
PFRMAT AL
TARGET T0092
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=5.80 
REMARK CONFIDENCE: LIKELY    (95% confidence [ ZSCORE>=5.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1vid
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1vid
V   2     T     4
K   3     K     5
D   4     E     6
T   5     Q     7
L   6     R     8
F   7     I     9
S   8     L    10
T   9     R    11
P  10     Y    12
I  11     V    13
A  12     Q    14
K  13     Q    15
L  14     N    16
G  15     A    17
D  16     K    18
F  17     P    19
I  18     G    20
F  19     D    21
D  20     P    22
E  21     Q    23
N  22     S    24
V  23     V    25
A  24     L    26
E  25     E    27
V  26     A    28
F  27     I    29
P  28     D    30
D  29     T    31
M  30     Y    32
I  31     C    33
Q  32     T    34
R  33     Q    35
S  34     K    36
V  35     E    37
P  36     W    38
G  37     A    39
Y  38     M    40
S  39     N    41
N  40     V    42
I  41     G    43
I  42     D    44
T  43     A    45
A  44     K    46
I  45     G    47
G  46     Q    48
M  47     I    49
L  48     M    50
A  49     D    51
E  50     A    52
R  51     V    53
F  52     I    54
V  53     R    55
T  54     E    56
A  55     Y    57
D  56     S    58
S  57     S    60
N  58     L    61
V  59     V    62
Y  60     L    63
D  61     E    64
L  62     L    65
G  63     G    66
C  64     A    67
S  65     Y    68
R  66     C    69
G  67     G    70
A  68     Y    71
A  69     S    72
T  70     A    73
L  71     V    74
S  72     R    75
A  73     M    76
R  74     A    77
R  75     R    78
N  76     L    79
I  77     L    80
Q  79     Q    81
P  80     P    82
N  81     G    83
V  82     A    84
K  83     R    85
I  84     L    86
I  85     L    87
G  86     T    88
I  87     M    89
D  88     E    90
N  89     M    91
S  90     N    92
Q  91     P    93
P  92     D    94
M  93     Y    95
V  94     A    96
E  95     A    97
R  96     I    98
C  97     T    99
R  98     Q   100
Q  99     Q   101
H 100     M   102
I 101     L   103
A 102     N   104
A 103     F   105
Y 104     A   106
H 105     G   107
S 106     L   108
E 107     Q   109
I 108     D   110
P 109     K   111
V 110     V   112
E 111     T   113
I 112     I   114
L 113     L   115
C 114     S   119
N 115     Q   120
D 116     D   121
I 117     L   122
R 118     I   123
H 119     P   124
V 120     Q   125
E 121     L   126
I 122     K   127
K 123     K   128
N 124     K   129
A 125     Y   130
S 126     D   131
M 127     V   132
V 128     D   133
I 129     T   134
L 130     L   135
N 131     D   136
F 132     M   137
T 133     V   138
L 134     F   139
Q 135     L   140
F 136     D   141
L 137     H   142
P 138     W   143
P 139     K   144
E 140     D   145
D 141     R   146
R 142     Y   147
I 143     L   148
A 144     P   149
L 145     D   150
L 146     T   151
T 147     L   152
K 148     L   153
I 149     L   154
Y 150     E   155
E 151     K   156
G 152     C   157
L 153     L   159
N 154     L   160
P 155     R   161
N 156     K   162
G 157     G   163
V 158     T   164
L 159     V   165
V 160     L   166
L 161     L   167
S 162     A   168
E 163     D   169
K 164     N   170
F 165     V   171
R 166     I   172
F 167     V   173
E 168     P   174
D 169     G   175
T 170     T   176
H 180     P   177
H 181     D   178
Q 182     F   179
F 183     L   180
K 184     A   181
R 185     Y   182
A 186     V   183
N 187     R   184
G 188     G   185
Y 189     S   186
S 190     S   187
E 191     S   188
L 192     F   189
E 193     E   190
V 194     C   191
S 195     T   192
Q 196     H   193
K 197     Y   194
R 198     S   195
T 199     S   196
A 200     Y   197
L 201     L   198
E 202     E   199
N 203     Y   200
V 204     M   201
M 205     K   202
R 206     V   203
T 207     V   204
D 208     D   205
S 209     G   206
I 210     L   207
E 211     E   208
T 212     K   209
H 213     A   210
K 214     I   211
V 215     Y   212
R 216     Q   213
L 217     G   214
K 218     P   215
N 219     S   216
TER
END

