
PFRMAT AL
TARGET T0092
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.83 
REMARK CONFIDENCE: MARGINAL  (90% confidence [ ZSCORE>=4.7 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: RrnaAD
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1yub
M   1     M     1
V   2     N     2
K   3     K     3
D   4     N     4
T   5     I     5
L   6     K     6
F   7     Y     7
S   8     S     8
T   9     Q     9
P  10     N    10
I  11     F    11
Y  38     L    12
S  39     T    13
N  40     S    14
I  41     E    15
I  42     K    16
T  43     V    17
A  44     L    18
I  45     N    19
G  46     Q    20
M  47     I    21
L  48     I    22
A  49     K    23
E  50     Q    24
R  51     L    25
F  52     N    26
V  53     L    27
T  54     K    28
A  55     E    29
D  56     T    30
S  57     D    31
N  58     T    32
V  59     V    33
Y  60     Y    34
D  61     E    35
L  62     I    36
G  63     G    37
C  64     T    38
S  65     G    39
R  66     K    40
G  67     G    41
A  68     H    42
A  69     L    43
T  70     T    44
L  71     T    45
S  72     K    46
A  73     L    47
R  74     A    48
R  75     K    49
N  76     I    50
I  77     S    51
N  78     K    52
N  81     Q    53
V  82     V    54
K  83     T    55
I  84     S    56
I  85     I    57
G  86     E    58
Q  91     L    59
P  92     D    60
V  94     S    61
E  95     H    62
R  96     L    63
C  97     F    64
R  98     N    65
Q  99     L    66
H 100     S    67
I 101     S    68
A 102     E    69
A 103     K    70
Y 104     L    71
H 105     K    72
S 106     L    73
E 107     N    74
I 108     T    75
P 109     R    76
V 110     V    77
E 111     T    78
I 112     L    79
L 113     I    80
C 114     H    81
N 115     Q    82
D 116     D    83
I 117     I    84
R 118     L    85
H 119     Q    86
V 120     F    87
E 121     Q    88
I 122     F    89
K 123     P    90
N 124     N    91
A 125     K    92
S 126     Q    93
L 130     R    94
N 131     Y    95
F 132     K    96
T 133     I    97
L 134     V    98
Q 135     G    99
F 136     N   100
L 137     I   101
P 138     P   102
P 139     Y   103
E 140     H   104
D 141     L   105
R 142     S   106
I 143     T   107
A 144     Q   108
L 145     I   109
L 146     I   110
T 147     K   111
K 148     K   112
I 149     V   113
Y 150     V   114
E 151     F   115
G 152     E   116
L 153     S   117
N 154     R   118
P 155     A   119
N 156     S   120
G 157     D   121
V 158     I   122
L 159     Y   123
V 160     L   124
L 161     I   125
S 162     V   126
E 163     E   127
K 164     E   128
F 165     G   129
R 166     F   130
F 167     Y   131
E 168     K   132
D 169     R   133
T 170     T   134
K 171     L   135
I 172     D   136
N 173     I   137
H 174     H   138
L 175     R   139
L 176     T   140
I 177     L   141
D 178     G   142
L 179     L   143
H 180     L   144
H 181     S   170
Q 182     V   171
F 183     L   172
K 184     I   173
R 185     K   174
A 186     L   175
N 187     T   176
G 188     R   177
Y 189     H   178
S 190     T   179
E 191     T   180
L 192     D   181
E 193     V   182
V 194     P   183
S 195     D   184
Q 196     K   185
K 197     Y   186
R 198     W   187
T 199     K   188
A 200     L   189
L 201     Y   190
E 202     T   191
N 203     Y   192
V 204     F   193
M 205     V   194
R 206     S   195
T 207     K   196
D 208     W   197
S 209     V   198
I 210     N   199
E 211     R   200
T 212     E   201
H 213     Y   202
K 214     R   203
V 215     Q   204
R 216     L   205
L 217     F   206
K 218     T   207
N 219     K   208
V 220     N   209
G 221     Q   210
F 222     F   211
S 223     H   212
Q 224     Q   213
V 225     A   214
E 226     M   215
L 227     K   216
W 228     H   217
F 229     A   218
Q 230     K   219
C 231     V   220
F 232     N   221
N 233     N   222
F 234     L   223
G 235     S   224
S 236     T   225
M 237     I   226
I 238     T   227
A 239     Y   228
V 240     E   229
K 241     Q   230
TER
END

