
PFRMAT AL
TARGET T0092
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1vid
V    2 T 4
K    3 K 5
D    4 Q 7
T    5 R 8
L    6 I 9
F    7 L 10
S    8 R 11
T    9 Y 12
P   10 V 13
I   11 Q 14
A   12 Q 15
K   13 N 16
L   14 A 17
G   15 G 20
D   16 D 21
F   17 P 22
I   18 Q 23
F   19 S 24
D   20 V 25
E   21 L 26
N   22 E 27
V   23 A 28
A   24 I 29
E   25 D 30
V   26 T 31
F   27 Y 32
P   28 C 33
D   29 T 34
M   30 Q 35
I   31 K 36
Q   32 E 37
R   33 W 38
S   34 A 39
V   35 M 40
P   36 N 41
G   37 V 42
Y   38 G 43
S   39 D 44
N   40 A 45
I   41 K 46
I   42 G 47
T   43 Q 48
A   44 I 49
I   45 M 50
G   46 D 51
M   47 A 52
L   48 V 53
A   49 I 54
E   50 R 55
R   51 E 56
T   54 Y 57
A   55 S 58
D   56 P 59
S   57 S 60
N   58 L 61
V   59 V 62
Y   60 L 63
D   61 E 64
L   62 L 65
G   63 G 66
C   64 A 67
S   65 Y 68
R   66 C 69
G   67 G 70
A   68 Y 71
A   69 S 72
T   70 A 73
L   71 V 74
S   72 R 75
A   73 M 76
R   74 A 77
R   75 R 78
N   76 L 79
I   77 L 80
Q   79 Q 81
P   80 P 82
N   81 G 83
V   82 A 84
K   83 R 85
I   84 L 86
I   85 L 87
G   86 T 88
I   87 M 89
D   88 E 90
N   89 M 91
S   90 N 92
Q   91 P 93
P   92 D 94
M   93 Y 95
V   94 A 96
E   95 A 97
R   96 I 98
C   97 T 99
R   98 Q 100
Q   99 Q 101
H  100 M 102
I  101 L 103
A  102 N 104
A  103 F 105
Y  104 A 106
H  105 G 107
S  106 L 108
E  107 Q 109
I  108 D 110
P  109 K 111
V  110 V 112
E  111 T 113
I  112 I 114
L  113 L 115
C  114 N 116
N  115 G 117
D  116 A 118
I  117 S 119
R  118 Q 120
H  119 D 121
V  120 L 122
E  121 D 131
I  122 V 132
K  123 D 133
N  124 T 134
A  125 L 135
S  126 D 136
M  127 M 137
V  128 V 138
I  129 F 139
L  130 L 140
N  131 D 141
F  132 H 142
T  133 W 143
L  137 K 144
P  138 D 145
P  139 R 146
E  140 Y 147
D  141 L 148
R  142 P 149
I  143 D 150
A  144 T 151
L  145 L 152
L  146 L 153
T  147 L 154
K  148 E 155
I  149 K 156
Y  150 C 157
E  151 G 158
G  152 L 159
L  153 L 160
N  154 R 161
P  155 K 162
N  156 G 163
G  157 T 164
V  158 V 165
L  159 L 166
V  160 L 167
L  161 A 168
S  162 D 169
E  163 N 170
F  165 V 171
R  166 I 172
F  167 V 173
E  168 P 174
D  169 G 175
T  170 T 176
K  171 P 177
L  179 D 178
H  180 F 179
H  181 L 180
Q  182 A 181
F  183 Y 182
K  184 V 183
R  185 R 184
G  188 G 185
Y  189 S 186
S  190 S 187
E  191 S 188
L  192 F 189
E  193 E 190
V  194 C 191
S  195 T 192
Q  196 H 193
K  197 Y 194
R  198 S 195
T  199 S 196
A  200 Y 197
L  201 L 198
E  202 E 199
N  203 Y 200
V  204 M 201
M  205 K 202
R  206 V 203
T  207 V 204
D  208 D 205
S  209 G 206
I  210 L 207
E  211 E 208
T  212 K 209
H  213 A 210
K  214 I 211
V  215 Y 212
R  216 Q 213
L  217 G 214
K  218 P 215
N  219 S 216
TER
END

