
PFRMAT AL
TARGET T0092
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1bc5_A
M    1 M 16
V    2 L 22
K    3 S 23
D    4 D 24
T    5 A 25
L    6 H 26
F    7 F 27
S    8 V 55
T    9 R 56
P   10 R 57
I   11 L 58
A   12 R 59
K   13 A 60
L   14 L 61
G   15 G 62
D   16 L 63
F   17 D 64
I   18 D 65
F   19 F 66
D   20 G 67
E   21 R 68
N   22 Y 69
V   23 L 70
A   24 S 71
E   25 M 72
V   26 L 73
F   27 E 74
P   28 A 75
D   29 N 76
M   30 Q 77
I   31 N 78
Q   32 S 79
R   33 A 80
S   34 E 81
V   35 W 82
P   36 Q 83
G   37 A 84
Y   38 F 85
S   39 I 86
N   40 N 87
I   41 A 88
I   42 L 89
T   43 T 90
A   44 H 102
I   45 F 103
G   46 P 104
M   47 I 105
L   48 L 106
A   49 A 107
E   50 E 108
R   51 H 109
F   52 A 110
V   53 R 113
T   54 H 114
A   55 G 115
D   56 E 116
S   57 Y 117
N   58 R 118
V   59 V 119
Y   60 W 120
D   61 S 121
L   62 A 122
G   63 A 123
C   64 A 124
S   65 S 125
R   66 T 126
G   67 G 127
A   68 A 134
A   69 I 135
T   70 T 136
L   71 L 137
S   72 A 138
A   73 D 139
R   74 A 140
R   75 L 141
N   76 G 142
I   77 M 143
N   78 A 144
Q   79 P 145
P   80 G 146
N   81 R 147
V   82 W 148
K   83 K 149
I   84 V 150
I   85 F 151
G   86 A 152
I   87 S 153
D   88 D 154
N   89 I 155
S   90 D 156
Q   91 T 157
P   92 E 158
M   93 V 159
V   94 L 160
E   95 E 161
R   96 K 162
C   97 A 163
R   98 R 164
Q   99 S 165
H  100 G 166
I  101 I 167
A  102 Y 168
A  103 S 171
Y  104 E 172
H  105 L 173
S  106 K 174
E  107 T 175
I  108 L 176
P  109 S 177
V  110 V 206
E  111 E 207
I  112 F 208
L  113 S 209
C  114 S 210
N  115 V 211
D  116 N 212
I  117 L 213
R  118 L 214
H  119 E 215
V  120 K 216
E  121 Y 218
I  122 N 219
K  123 V 220
N  124 P 221
A  125 G 222
S  126 P 223
M  127 F 224
V  128 I 227
I  129 F 228
L  130 C 229
N  131 R 230
F  132 N 231
T  133 V 232
L  134 M 233
Q  135 I 234
F  136 Y 235
L  137 F 236
P  138 D 237
P  139 K 238
E  140 T 239
D  141 T 240
R  142 Q 241
I  143 E 242
A  144 D 243
L  145 I 244
L  146 L 245
T  147 R 246
K  148 R 247
I  149 F 248
Y  150 V 249
E  151 P 250
G  152 L 251
L  153 L 252
N  154 K 253
P  155 P 254
N  156 D 255
G  157 G 256
V  158 L 257
L  159 L 258
V  160 F 259
L  161 A 260
S  162 V 270
E  163 R 271
K  164 E 272
F  165 F 273
R  166 S 274
F  167 L 275
E  168 R 276
D  169 G 277
T  170 Q 278
K  171 T 279
I  172 V 280
N  173 Y 281
H  174 A 282
L  175 L 283
L  176 S 284
TER
END

