
PFRMAT AL
TARGET T0092
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1xva_A
S    8 V 1
T    9 D 2
P   10 S 3
I   11 V 4
A   12 Y 5
K   13 R 6
L   14 T 7
G   15 R 8
D   16 S 9
F   17 L 10
I   18 G 11
F   19 V 12
V   23 A 13
A   24 A 14
E   25 E 15
V   26 G 16
F   27 I 17
P   28 P 18
D   29 D 19
M   30 Q 20
I   31 Y 21
Q   32 G 24
R   33 E 25
S   34 A 26
V   35 A 27
P   36 R 28
G   37 V 29
Y   38 W 30
S   39 Q 31
N   40 L 32
I   41 Y 33
I   42 I 34
T   43 W 47
A   44 L 48
I   45 L 49
G   46 G 50
M   47 L 51
L   48 L 52
A   49 R 53
E   50 Q 54
R   51 H 55
F   52 G 56
V   53 C 57
T   54 H 58
A   55 R 59
V   59 V 60
Y   60 L 61
D   61 D 62
L   62 V 63
G   63 A 64
C   64 C 65
S   65 G 66
R   66 T 67
G   67 G 68
A   68 V 69
A   69 D 70
T   70 S 71
L   71 I 72
S   72 M 73
A   73 L 74
R   74 V 75
R   75 E 76
N   76 E 77
N   81 G 78
V   82 F 79
K   83 S 80
I   84 V 81
I   85 T 82
G   86 S 83
I   87 V 84
D   88 D 85
N   89 A 86
S   90 S 87
Q   91 D 88
P   92 K 89
M   93 M 90
V   94 L 91
E   95 K 92
R   96 Y 93
C   97 A 94
R   98 K 96
Q   99 E 97
H  100 R 98
I  101 W 99
A  102 K 103
A  103 E 104
Y  104 P 105
H  105 A 106
S  106 F 107
E  107 D 108
I  108 K 109
P  109 W 110
V  110 V 111
I  112 I 112
L  113 E 113
C  114 E 114
N  115 A 115
D  116 N 116
I  117 W 117
R  118 L 118
H  119 T 119
V  120 L 120
E  121 D 123
I  122 V 124
K  123 P 125
N  124 A 126
A  125 G 127
S  126 D 128
M  127 V 133
V  128 I 134
I  129 C 135
L  130 L 136
N  131 G 137
F  132 N 138
T  133 S 139
L  134 F 140
Q  135 A 141
F  136 H 142
L  137 L 143
P  138 D 149
P  139 Q 150
E  140 S 151
D  141 E 152
R  142 H 153
I  143 R 154
A  144 L 155
L  145 A 156
L  146 L 157
T  147 K 158
K  148 N 159
I  149 I 160
Y  150 A 161
E  151 S 162
G  152 M 163
L  153 V 164
N  154 R 165
P  155 P 166
N  156 G 167
G  157 G 168
V  158 L 169
L  159 L 170
V  160 V 171
L  161 I 172
S  162 Y 177
E  163 D 178
K  164 Y 179
F  165 I 180
R  166 I 192
F  167 Y 193
E  168 Y 194
D  169 K 195
T  170 S 196
K  171 D 197
I  172 L 247
N  173 A 248
H  174 S 249
L  175 F 250
L  176 T 251
I  177 E 252
D  178 L 253
L  179 V 254
H  180 Q 255
H  181 E 256
Q  182 A 257
F  183 F 258
N  187 G 259
G  188 G 260
Y  189 R 261
S  190 Q 263
E  191 H 264
L  192 S 265
E  193 V 266
V  194 L 267
S  195 G 268
Q  196 D 269
K  197 F 270
R  198 K 271
T  199 P 272
A  200 Y 273
L  201 R 274
E  202 P 275
N  203 G 276
R  206 Q 277
T  207 A 278
D  208 Y 279
S  209 V 280
I  210 P 281
E  211 C 282
T  212 Y 283
H  213 F 284
K  214 I 285
V  215 H 286
R  216 V 287
L  217 L 288
K  218 K 289
N  219 K 290
V  220 T 291
G  221 G 292
TER
END

