
PFRMAT AL
TARGET T0092
AUTHOR 3092-8926-3558
METHOD PDB BLAST http://bioinformatics.ljcrf.edu/pdb_blast/
METHOD 1) Use PSI-Blast to collect homologs and create a sequence profile
METHOD    for the family.
METHOD 2) Use created profile to search for related proteins in PDB
MODEL  3
PARENT 1vid_
V 59 V 62
Y 60 L 63
D 61 E 64
L 62 L 65
G 63 G 66
C 64 A 67
S 65 Y 68
R 66 C 69
G 67 G 70
A 68 Y 71
A 69 S 72
T 70 A 73
L 71 V 74
S 72 R 75
A 73 M 76
R 74 A 77
R 75 R 78
N 76 L 79
I 77 L 80
N 78 Q 81
P 80 P 82
N 81 G 83
V 82 A 84
K 83 R 85
I 84 L 86
I 85 L 87
G 86 T 88
I 87 M 89
D 88 E 90
N 89 M 91
S 90 N 92
Q 91 P 93
P 92 D 94
M 93 Y 95
V 94 A 96
E 95 A 97
R 96 I 98
C 97 T 99
R 98 Q 100
Q 99 Q 101
H 100 M 102
I 101 L 103
A 102 N 104
A 103 F 105
Y 104 A 106
H 105 G 107
S 106 L 108
E 107 Q 109
I 108 D 110
P 109 K 111
V 110 V 112
E 111 T 113
I 112 I 114
L 113 L 115
C 114 N 116
N 115 G 117
D 116 A 118
I 117 S 119
R 118 Q 120
H 119 D 121
V 120 L 122
E 121 I 123
I 122 P 124
K 123 K 128
N 124 K 129
A 125 Y 130
S 126 D 131
M 127 V 132
V 128 D 133
I 129 T 134
L 130 L 135
N 131 D 136
F 132 M 137
T 133 V 138
L 134 F 139
Q 135 L 140
F 136 D 141
L 137 H 142
P 138 W 143
P 139 K 144
E 140 D 145
D 141 R 146
R 142 P 149
I 143 D 150
A 144 T 151
L 145 L 152
L 146 L 153
T 147 L 154
K 148 E 155
I 149 K 156
Y 150 C 157
E 151 G 158
G 152 L 159
L 153 L 160
N 154 R 161
P 155 K 162
N 156 G 163
G 157 T 164
V 158 V 165
L 159 L 166
V 160 L 167
L 161 A 168
S 162 D 169
E 163 N 170
K 164 V 171
F 165 I 172
R 166 V 173
F 167 P 174
E 168 G 175
D 169 T 176
T 170 P 177
TER
END

