
PFRMAT AL
TARGET T0092
AUTHOR 3092-8926-3558
METHOD PDB BLAST http://bioinformatics.ljcrf.edu/pdb_blast/
METHOD 1) Use PSI-Blast to collect homologs and create a sequence profile
METHOD    for the family.
METHOD 2) Use created profile to search for related proteins in PDB
MODEL  4
PARENT 1yub_
P 28 N 2
D 29 K 3
M 30 N 4
I 31 I 5
Q 32 K 6
R 33 Y 7
S 34 S 8
V 35 Q 9
P 36 N 10
G 37 F 11
Y 38 L 12
S 39 T 13
N 40 S 14
I 41 E 15
I 42 K 16
T 43 V 17
A 44 L 18
I 45 N 19
G 46 Q 20
M 47 I 21
L 48 I 22
A 49 K 23
E 50 Q 24
R 51 L 25
F 52 N 26
V 53 L 27
T 54 K 28
A 55 E 29
D 56 T 30
S 57 D 31
N 58 T 32
V 59 V 33
Y 60 Y 34
D 61 E 35
L 62 I 36
G 63 G 37
C 64 T 38
S 65 G 39
R 66 K 40
G 67 G 41
A 68 H 42
A 69 L 43
T 70 T 44
L 71 T 45
S 72 K 46
A 73 L 47
R 74 A 48
R 75 K 49
N 76 I 50
I 77 S 51
N 78 K 52
K 83 Q 53
I 84 V 54
I 85 T 55
G 86 S 56
I 87 I 57
D 88 E 58
N 89 L 59
S 90 D 60
Q 91 S 61
P 92 H 62
M 93 L 63
V 94 F 64
E 95 N 65
R 96 L 66
C 97 S 67
R 98 S 68
Q 99 E 69
H 100 K 70
I 101 L 71
A 102 K 72
S 106 L 73
E 107 N 74
I 108 T 75
P 109 R 76
V 110 V 77
E 111 T 78
I 112 L 79
L 113 I 80
C 114 H 81
N 115 Q 82
D 116 D 83
I 117 I 84
R 118 L 85
H 119 Q 86
V 120 F 87
E 121 Q 88
I 122 F 89
K 123 P 90
N 124 N 91
A 125 K 92
S 126 Q 93
M 127 R 94
V 128 Y 95
I 129 K 96
L 130 I 97
N 131 V 98
F 132 G 99
T 133 N 100
L 134 I 101
Q 135 P 102
F 136 Y 103
L 137 H 104
TER
END

