
PFRMAT SS
TARGET T0092
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0092.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 80.4533
METHOD
MODEL 1
M C 0.63
V C 0.66
K C 0.68
D C 0.56
T H 0.53
L H 0.59
F H 0.61
S H 0.68
T H 0.72
P H 0.75
I H 0.83
A H 0.86
K H 0.86
L H 0.84
G H 0.80
D H 0.77
F H 0.70
I H 0.58
F C 0.50
D C 0.71
E C 0.69
N C 0.73
V H 0.76
A H 0.81
E H 0.86
V H 0.80
F H 0.75
P H 0.76
D H 0.77
M H 0.72
I H 0.66
Q H 0.61
R H 0.55
S C 0.56
V C 0.56
P C 0.51
G C 0.53
Y H 0.53
S H 0.61
N H 0.68
I H 0.79
I H 0.86
T H 0.89
A H 0.93
I H 0.95
G H 0.94
M H 0.94
L H 0.91
A H 0.87
E H 0.81
R H 0.53
F C 0.69
V C 0.72
T C 0.88
A C 0.90
D C 0.93
S C 0.59
N E 0.84
V E 0.93
Y E 0.91
D E 0.72
L C 0.56
G C 0.73
C C 0.81
S C 0.85
R C 0.56
G H 0.73
A H 0.91
A H 0.95
T H 0.97
L H 0.98
S H 0.98
A H 0.98
R H 0.97
R H 0.96
N H 0.92
I H 0.79
N C 0.92
Q C 0.92
P C 0.92
N C 0.90
V C 0.59
K E 0.81
I E 0.93
I E 0.98
G E 0.98
I E 0.89
D E 0.58
N C 0.88
S C 0.95
Q H 0.94
P H 0.98
M H 0.99
V H 0.99
E H 1.00
R H 1.00
C H 0.99
R H 0.99
Q H 0.98
H H 0.95
I H 0.91
A H 0.86
A H 0.78
Y C 0.51
H C 0.91
S C 0.85
E C 0.82
I C 0.81
P C 0.75
V E 0.70
E E 0.92
I E 0.97
L E 0.95
C E 0.87
N E 0.57
D C 0.75
I C 0.68
R C 0.65
H C 0.61
V C 0.79
E C 0.87
I C 0.86
K C 0.93
N C 0.87
A C 0.77
S C 0.54
M E 0.93
V E 0.95
I E 0.94
L E 0.88
N H 0.40
F H 0.50
T H 0.70
L H 0.68
Q H 0.53
F C 0.57
L C 0.85
P C 0.96
P H 0.80
E H 0.80
D H 0.83
R H 0.98
I H 0.99
A H 0.99
L H 0.99
L H 0.99
T H 0.99
K H 0.99
I H 0.99
Y H 0.98
E H 0.95
G H 0.89
L H 0.62
N C 0.95
P C 0.97
N C 0.99
G C 0.66
V E 0.85
L E 0.98
V E 0.99
L E 0.97
S E 0.83
E E 0.50
K C 0.70
F C 0.69
R C 0.77
F C 0.83
E C 0.78
D C 0.65
T C 0.60
K C 0.54
I H 0.65
N H 0.82
H H 0.90
L H 0.90
L H 0.91
I H 0.91
D H 0.93
L H 0.91
H H 0.88
H H 0.85
Q H 0.80
F H 0.76
K H 0.63
R H 0.48
A C 0.60
N C 0.75
G C 0.80
Y C 0.64
S C 0.53
E C 0.46
L C 0.45
E C 0.49
V H 0.58
S H 0.61
Q H 0.57
K H 0.47
R H 0.37
T C 0.48
A C 0.73
L C 0.84
E C 0.86
N C 0.76
V C 0.63
M C 0.62
R C 0.67
T C 0.81
D C 0.87
S C 0.93
I H 0.94
E H 0.96
T H 0.97
H H 0.99
K H 0.99
V H 0.99
R H 0.99
L H 0.99
K H 0.98
N H 0.96
V H 0.89
G C 0.97
F C 0.96
S E 0.52
Q E 0.84
V E 0.87
E E 0.86
L E 0.77
W E 0.61
F C 0.39
Q C 0.48
C C 0.55
F C 0.67
N C 0.74
F C 0.62
G C 0.44
S E 0.64
M E 0.79
I E 0.75
A E 0.70
V C 0.45
K C 0.92
END

