
PFRMAT SS
TARGET T0092
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.99
V C 0.70
K C 0.40
D C 0.30
T C 0.09
L C 0.15
F C 0.11
S C 0.23
T C 0.26
P H 0.01
I H 0.44
A H 0.48
K H 0.46
L H 0.30
G H 0.09
D H 0.05
F H 0.23
I H 0.23
F H 0.22
D H 0.25
E C 0.03
N C 0.08
V H 0.68
A H 0.65
E H 0.68
V H 0.61
F H 0.40
P H 0.49
D H 0.76
M H 0.73
I H 0.70
Q H 0.48
R H 0.28
S C 0.23
V C 0.65
P C 0.30
G H 0.36
Y H 0.62
S H 0.84
N H 0.87
I H 0.93
I H 0.93
T H 0.94
A H 0.93
I H 0.88
G H 0.80
M H 0.63
L H 0.39
A H 0.13
E H 0.22
R H 0.31
F H 0.59
V H 0.41
T C 0.02
A C 0.78
D C 0.94
S C 0.91
N E 0.91
V E 0.93
Y E 0.91
D E 0.87
L E 0.39
G E 0.54
C C 0.53
S C 0.88
R C 0.92
G C 0.85
A H 0.41
A H 0.72
T H 0.86
L H 0.87
S H 0.91
A H 0.91
R H 0.92
R H 0.87
N H 0.53
I C 0.51
N C 0.88
Q C 0.93
P C 0.94
N C 0.88
V E 0.78
K E 0.91
I E 0.93
I E 0.93
G E 0.89
I E 0.51
D E 0.14
N C 0.91
S C 0.91
Q H 0.88
P H 0.93
M H 0.93
V H 0.93
E H 0.93
R H 0.94
C H 0.96
R H 0.94
Q H 0.94
H H 0.91
I H 0.86
A H 0.73
A H 0.17
Y C 0.41
H C 0.89
S C 0.90
E C 0.89
I C 0.89
P C 0.83
V E 0.74
E E 0.83
I E 0.91
L E 0.87
C E 0.79
N C 0.88
D C 0.62
I H 0.18
R H 0.22
H H 0.27
V C 0.79
E C 0.72
I C 0.34
K C 0.07
N C 0.08
A C 0.67
S C 0.77
M E 0.71
V E 0.68
I E 0.92
L E 0.86
N E 0.53
F H 0.06
T H 0.32
L H 0.07
Q H 0.17
F C 0.05
L C 0.83
P C 0.87
P H 0.22
E H 0.59
D H 0.84
R H 0.88
I H 0.91
A H 0.95
L H 0.96
L H 0.95
T H 0.96
K H 0.95
I H 0.94
Y H 0.93
E H 0.87
G H 0.76
L C 0.18
N C 0.80
P C 0.93
N C 0.94
G C 0.72
V E 0.80
L E 0.95
V E 0.94
L E 0.95
S E 0.84
E E 0.66
K E 0.41
F C 0.07
R C 0.65
F C 0.87
E C 0.91
D C 0.88
T C 0.50
K H 0.01
I H 0.46
N H 0.62
H H 0.80
L H 0.88
L H 0.92
I H 0.93
D H 0.93
L H 0.93
H H 0.93
H H 0.96
Q H 0.95
F H 0.93
K H 0.88
R H 0.79
A H 0.38
N C 0.23
G C 0.69
Y C 0.49
S C 0.01
E C 0.16
L C 0.13
E C 0.23
V H 0.10
S H 0.08
Q C 0.02
K C 0.21
R C 0.22
T C 0.13
A H 0.32
L H 0.42
E H 0.32
N C 0.09
V C 0.45
M C 0.75
R C 0.84
T C 0.89
D C 0.86
S C 0.77
I H 0.26
E H 0.74
T H 0.84
H H 0.83
K H 0.93
V H 0.93
R H 0.82
L H 0.89
K H 0.59
N C 0.02
V C 0.32
G C 0.93
F H 0.84
S H 0.89
Q H 0.92
V H 0.93
E H 0.95
L H 0.95
W H 0.96
F H 0.93
Q H 0.87
C H 0.64
F C 0.06
N C 0.85
F C 0.80
G C 0.40
S E 0.74
M E 0.86
I E 0.88
A E 0.84
V E 0.60
K C 0.92
END

