
PFRMAT AL
TARGET T0093
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1qor_A
Y    7 Y 136
E    8 E 137
P    9 P 140
E   10 D 141
I   11 E 142
P   12 A 150
Q   13 G 151
N   14 G 152
T   15 V 153
G   16 G 154
N   17 L 155
I   18 I 156
I   19 C 158
R   20 Q 159
L   21 W 160
C   22 A 161
A   23 K 162
N   24 A 163
T   25 L 164
G   26 G 165
F   27 A 166
R   28 K 167
L   29 L 168
I   32 I 169
E   33 G 170
P   34 T 171
L   35 V 172
G   36 G 173
F   37 T 174
T   38 A 175
W   39 Q 176
D   40 K 177
D   41 A 178
K   42 Q 179
R   43 S 180
L   44 A 181
R   45 L 182
R   46 K 183
S   47 A 184
D   50 G 185
Y   51 A 186
H   52 W 187
E   53 Q 188
F   54 V 189
A   55 I 190
E   56 N 191
I   57 Y 192
K   58 R 193
R   59 E 194
H   60 E 195
K   61 D 196
T   62 L 197
F   63 V 198
E   64 E 199
A   65 R 200
F   66 L 201
L   67 K 202
E   68 E 203
S   69 I 204
E   70 T 205
K   71 G 206
P   72 G 207
K   73 K 208
R   74 K 209
L   75 V 210
F   76 R 211
A   77 V 212
L   78 V 213
T   79 Y 214
T   80 D 215
K   81 S 216
G   82 V 217
C   83 G 218
P   84 R 219
A   85 D 220
H   86 T 221
S   87 W 222
Q   88 E 223
V   89 R 224
K   90 S 225
F   91 L 226
K   92 D 227
L   93 R 232
G   94 G 233
D   95 L 234
Y   96 M 235
L   97 V 236
M   98 S 237
F   99 F 238
G  100 G 239
P  101 N 240
E  102 S 241
T  103 V 245
R  104 T 246
G  105 G 247
I  106 V 248
P  107 N 249
M  108 L 250
S  109 G 251
I  110 I 252
L  111 L 253
N  112 N 254
E  113 Q 255
M  114 K 256
P  115 G 257
M  116 S 258
Q  118 L 259
K  119 Y 260
I  120 V 261
R  121 T 262
I  122 R 263
P  123 P 264
M  124 S 265
TER
END

