
PFRMAT AL
TARGET T0093
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  2
PARENT 1d1p_A
T 15 L 14
G 16 G 15
N 17 N 16
I 18 F 17
I 19 C 18
R 20 R 19
L 21 S 20
C 22 P 21
A 23 M 22
N 24 A 23
T 25 E 24
G 26 A 25
F 27 I 26
R 28 F 27
L 29 K 28
H 30 H 29
L 31 E 30
I 32 V 31
E 33 E 32
P 34 K 33
L 35 A 34
G 36 N 35
F 37 L 36
T 38 E 37
W 39 N 38
D 40 R 39
D 41 F 40
K 42 N 41
R 43 K 42
L 44 I 43
R 45 D 44
R 46 S 45
S 47 F 46
G 48 G 47
L 49 T 48
D 50 S 49
Y 51 N 50
H 52 Y 51
E 53 H 52
K 58 V 53
R 59 G 54
H 60 E 55
K 61 S 56
T 62 P 57
F 63 D 58
E 64 H 59
A 65 R 60
F 66 T 61
L 67 V 62
E 68 S 63
S 69 I 64
E 70 C 65
K 71 K 66
P 72 Q 67
K 73 H 68
R 74 G 69
L 78 V 70
T 79 K 71
T 80 I 72
K 81 N 73
G 82 H 74
C 83 K 75
P 84 G 76
A 85 K 77
H 86 Q 78
S 87 I 79
Q 88 K 80
V 89 T 81
K 90 K 82
F 91 H 83
K 92 F 84
L 93 D 85
G 94 E 86
D 95 Y 87
Y 96 D 88
L 97 Y 89
M 98 I 90
F 99 I 91
G 100 G 92
P 101 M 93
E 102 D 94
T 103 E 95
R 104 S 96
G 105 N 97
I 106 I 98
M 108 N 99
S 109 N 100
I 110 L 101
L 111 K 102
N 112 K 103
E 113 I 104
M 114 Q 105
P 115 P 106
M 116 E 107
E 117 G 108
Q 118 S 109
K 119 K 110
I 120 A 111
R 121 K 112
I 122 V 113
P 123 C 114
M 124 L 115
T 125 F 116
A 126 G 117
N 127 D 118
S 128 W 119
R 129 N 120
TER
END

