
PFRMAT TS
TARGET T0093
AUTHOR 5477-6509-1337
MODEL 2 UNREFINED
REMARK
REMARK   Work performed by Kai-Ming Ho, James R. Morris, Cai-Zhuang Wang,
REMARK                   Drena Dobbs, Tzu-Liang Chan, Young-Ok Im,
REMARK                   Josh Koch, Neil Voss
REMARK
REMARK   Acknowledgments to Amy Andreotti and Josh Lapan
REMARK
REMARK   Work supported by Pioneer Hi-Bred, by a Carver Foundation grant
REMARK     from Iowa State University, and a Laboratory Directed 
REMARK     Research and Development grant from Ames Laboratory, U.S.D.O.E.
REMARK
REMARK
METHOD   This structure is an ab initio prediction, made by annealing the 
METHOD   prediction using our coarse grained molecular dynamics model (two
METHOD   beads, one for the backbone and one for the side chain).  Hydrogen
METHOD   bonding assignments were made in order to bias the system toward
METHOD   the secondary structure prediction given by PHD.  Three different
METHOD   models were generated with this approach, using three different
METHOD   annealing schedules.
METHOD
METHOD   All atom models were generated using the MaxSprout Server (L. Holm,
METHOD   C. Sander (1991) J. Mol. Biol. 218:183-194), using the CA positions
METHOD   from the coarse grained model.  The resulting backbone is broken
METHOD   in a number of places, where the original CA only model was fully
METHOD   connected.  The "unrefined" model contains the original CA trace.
REMARK
REMARK
PARENT N/A
ATOM      1  CA  MET     1      -9.111  -7.190  -9.742  1.00  5.00           C
ATOM      2  CA  LEU     2      -7.035  -4.112  -8.864  1.00  5.00           C
ATOM      3  CA  ASP     3      -9.632  -2.145 -10.850  1.00  5.00           C
ATOM      4  CA  ILE     4      -7.161   0.761 -10.779  1.00  5.00           C
ATOM      5  CA  VAL     5      -6.726   4.538 -11.090  1.00  5.00           C
ATOM      6  CA  LEU     6      -4.426   7.557 -11.477  1.00  5.00           C
ATOM      7  CA  TYR     7      -7.117   9.579 -13.272  1.00  5.00           C
ATOM      8  CA  GLU     8     -10.377  11.432 -12.569  1.00  5.00           C
ATOM      9  CA  PRO     9     -10.062  10.322  -8.945  1.00  5.00           C
ATOM     10  CA  GLU    10     -13.814   9.637  -8.862  1.00  5.00           C
ATOM     11  CA  ILE    11     -13.506   7.968 -12.297  1.00  5.00           C
ATOM     12  CA  PRO    12     -17.137   6.876 -11.868  1.00  5.00           C
ATOM     13  CA  GLN    13     -17.148   3.345 -10.424  1.00  5.00           C
ATOM     14  CA  ASN    14     -20.560   2.997 -12.095  1.00  5.00           C
ATOM     15  CA  THR    15     -19.011   4.313 -15.323  1.00  5.00           C
ATOM     16  CA  GLY    16     -16.549   1.835 -16.855  1.00  5.00           C
ATOM     17  CA  ASN    17     -16.595   0.000 -13.511  1.00  5.00           C
ATOM     18  CA  ILE    18     -12.920  -0.776 -14.176  1.00  5.00           C
ATOM     19  CA  ILE    19     -11.681   1.832 -16.670  1.00  5.00           C
ATOM     20  CA  ARG    20     -10.973  -1.092 -19.017  1.00  5.00           C
ATOM     21  CA  LEU    21      -8.305   1.173 -20.535  1.00  5.00           C
ATOM     22  CA  CYS    22      -6.903   1.439 -17.006  1.00  5.00           C
ATOM     23  CA  ALA    23      -6.755  -2.373 -16.998  1.00  5.00           C
ATOM     24  CA  ASN    24      -4.083  -2.020 -19.697  1.00  5.00           C
ATOM     25  CA  THR    25      -2.190   0.222 -17.259  1.00  5.00           C
ATOM     26  CA  GLY    26      -2.712  -2.586 -14.729  1.00  5.00           C
ATOM     27  CA  PHE    27       0.948  -2.346 -13.748  1.00  5.00           C
ATOM     28  CA  ARG    28       0.546   1.432 -13.396  1.00  5.00           C
ATOM     29  CA  LEU    29      -2.452   0.677 -11.161  1.00  5.00           C
ATOM     30  CA  HIS    30      -2.067   4.164  -9.689  1.00  5.00           C
ATOM     31  CA  LEU    31       1.012   3.063  -7.724  1.00  5.00           C
ATOM     32  CA  ILE    32       1.811   6.749  -7.149  1.00  5.00           C
ATOM     33  CA  GLU    33       5.016   8.719  -6.516  1.00  5.00           C
ATOM     34  CA  PRO    34       4.626  12.424  -5.696  1.00  5.00           C
ATOM     35  CA  LEU    35       1.145  13.559  -6.768  1.00  5.00           C
ATOM     36  CA  GLY    36       0.491  14.715  -3.204  1.00  5.00           C
ATOM     37  CA  PHE    37      -1.483  11.519  -2.470  1.00  5.00           C
ATOM     38  CA  THR    38       1.750   9.594  -3.099  1.00  5.00           C
ATOM     39  CA  TRP    39       3.874   9.466   0.067  1.00  5.00           C
ATOM     40  CA  ASP    40       2.751  11.228   3.259  1.00  5.00           C
ATOM     41  CA  ASP    41       0.449  13.453   1.184  1.00  5.00           C
ATOM     42  CA  LYS    42      -1.253  14.753   4.341  1.00  5.00           C
ATOM     43  CA  ARG    43      -1.277  11.205   5.773  1.00  5.00           C
ATOM     44  CA  LEU    44      -0.259  12.722   9.122  1.00  5.00           C
ATOM     45  CA  ARG    45      -3.413  14.850   8.835  1.00  5.00           C
ATOM     46  CA  ARG    46      -5.272  11.523   8.673  1.00  5.00           C
ATOM     47  CA  SER    47      -3.519  10.731  11.968  1.00  5.00           C
ATOM     48  CA  GLY    48      -4.945  14.049  13.197  1.00  5.00           C
ATOM     49  CA  LEU    49      -8.744  14.384  13.290  1.00  5.00           C
ATOM     50  CA  ASP    50      -8.680  10.810  11.958  1.00  5.00           C
ATOM     51  CA  TYR    51     -12.247  10.617  13.297  1.00  5.00           C
ATOM     52  CA  HIS    52     -10.849  11.884  16.613  1.00  5.00           C
ATOM     53  CA  GLU    53      -8.426   8.941  16.482  1.00  5.00           C
ATOM     54  CA  PHE    54     -11.581   6.811  16.230  1.00  5.00           C
ATOM     55  CA  ALA    55     -12.724   8.625  19.386  1.00  5.00           C
ATOM     56  CA  GLU    56      -9.409   7.511  20.911  1.00  5.00           C
ATOM     57  CA  ILE    57     -10.591   3.965  20.148  1.00  5.00           C
ATOM     58  CA  LYS    58     -10.688   3.481  23.931  1.00  5.00           C
ATOM     59  CA  ARG    59      -6.990   4.416  23.961  1.00  5.00           C
ATOM     60  CA  HIS    60      -6.543   1.701  21.318  1.00  5.00           C
ATOM     61  CA  LYS    61      -4.580  -0.228  23.960  1.00  5.00           C
ATOM     62  CA  THR    62      -2.366   2.865  24.248  1.00  5.00           C
ATOM     63  CA  PHE    63      -1.944   2.669  20.461  1.00  5.00           C
ATOM     64  CA  GLU    64      -1.381   6.442  20.456  1.00  5.00           C
ATOM     65  CA  ALA    65       1.515   5.787  22.852  1.00  5.00           C
ATOM     66  CA  PHE    66       2.857   3.450  20.151  1.00  5.00           C
ATOM     67  CA  LEU    67       2.444   6.364  17.723  1.00  5.00           C
ATOM     68  CA  GLU    68       4.981   8.242  19.866  1.00  5.00           C
ATOM     69  CA  SER    69       4.033  11.430  17.996  1.00  5.00           C
ATOM     70  CA  GLU    70       4.439   9.562  14.695  1.00  5.00           C
ATOM     71  CA  LYS    71       7.935   8.520  15.824  1.00  5.00           C
ATOM     72  CA  PRO    72       8.112   6.143  12.845  1.00  5.00           C
ATOM     73  CA  LYS    73       6.992   9.004  10.584  1.00  5.00           C
ATOM     74  CA  ARG    74       4.795   6.513   8.708  1.00  5.00           C
ATOM     75  CA  LEU    75       7.701   5.793   6.361  1.00  5.00           C
ATOM     76  CA  PHE    76       5.167   5.190   3.573  1.00  5.00           C
ATOM     77  CA  ALA    77       7.614   6.889   1.188  1.00  5.00           C
ATOM     78  CA  LEU    78      10.741   4.738   0.807  1.00  5.00           C
ATOM     79  CA  THR    79      12.037   7.339  -1.665  1.00  5.00           C
ATOM     80  CA  THR    80      15.567   8.758  -1.387  1.00  5.00           C
ATOM     81  CA  LYS    81      18.690   9.199   0.759  1.00  5.00           C
ATOM     82  CA  GLY    82      17.441   6.612   3.270  1.00  5.00           C
ATOM     83  CA  CYS    83      15.946   3.137   3.759  1.00  5.00           C
ATOM     84  CA  PRO    84      19.402   1.525   3.651  1.00  5.00           C
ATOM     85  CA  ALA    85      19.239   1.006  -0.125  1.00  5.00           C
ATOM     86  CA  HIS    86      20.174   4.636  -0.738  1.00  5.00           C
ATOM     87  CA  SER    87      17.552   4.681  -3.509  1.00  5.00           C
ATOM     88  CA  GLN    88      14.019   3.337  -4.027  1.00  5.00           C
ATOM     89  CA  VAL    89      12.421   0.786  -1.683  1.00  5.00           C
ATOM     90  CA  LYS    90      14.159  -2.572  -1.248  1.00  5.00           C
ATOM     91  CA  PHE    91      15.800  -1.238   1.927  1.00  5.00           C
ATOM     92  CA  LYS    92      17.248  -4.737   2.393  1.00  5.00           C
ATOM     93  CA  LEU    93      13.664  -6.034   2.048  1.00  5.00           C
ATOM     94  CA  GLY    94      14.338  -8.287   5.053  1.00  5.00           C
ATOM     95  CA  ASP    95      15.962  -7.584   8.433  1.00  5.00           C
ATOM     96  CA  TYR    96      12.834  -8.921  10.160  1.00  5.00           C
ATOM     97  CA  LEU    97      10.690  -6.841   7.787  1.00  5.00           C
ATOM     98  CA  MET    98       9.452  -4.938  10.852  1.00  5.00           C
ATOM     99  CA  PHE    99      12.372  -2.523  10.411  1.00  5.00           C
ATOM    100  CA  GLY   100      14.576  -4.932  12.385  1.00  5.00           C
ATOM    101  CA  PRO   101      16.808  -2.074  13.570  1.00  5.00           C
ATOM    102  CA  GLU   102      14.353  -1.256  16.363  1.00  5.00           C
ATOM    103  CA  THR   103      14.110  -4.987  17.119  1.00  5.00           C
ATOM    104  CA  ARG   104      10.515  -6.167  17.610  1.00  5.00           C
ATOM    105  CA  GLY   105       9.605  -2.496  17.107  1.00  5.00           C
ATOM    106  CA  ILE   106       6.467  -1.274  15.316  1.00  5.00           C
ATOM    107  CA  PRO   107       8.771  -0.507  12.374  1.00  5.00           C
ATOM    108  CA  MET   108       6.973   1.851   9.973  1.00  5.00           C
ATOM    109  CA  SER   109       3.774   0.403  11.467  1.00  5.00           C
ATOM    110  CA  ILE   110       2.554  -0.069   7.883  1.00  5.00           C
ATOM    111  CA  LEU   111       5.223  -2.758   7.431  1.00  5.00           C
ATOM    112  CA  ASN   112       2.387  -5.230   6.797  1.00  5.00           C
ATOM    113  CA  GLU   113       1.050  -2.662   4.312  1.00  5.00           C
ATOM    114  CA  MET   114       4.387  -3.104   2.516  1.00  5.00           C
ATOM    115  CA  PRO   115       3.097  -0.727  -0.175  1.00  5.00           C
ATOM    116  CA  MET   116       0.210  -2.275  -2.130  1.00  5.00           C
ATOM    117  CA  GLU   117       0.287  -5.163   0.362  1.00  5.00           C
ATOM    118  CA  GLN   118      -2.675  -6.636  -1.538  1.00  5.00           C
ATOM    119  CA  LYS   119      -4.438  -3.273  -1.169  1.00  5.00           C
ATOM    120  CA  ILE   120      -6.782  -4.302  -3.995  1.00  5.00           C
ATOM    121  CA  ARG   121     -10.234  -5.489  -2.887  1.00  5.00           C
ATOM    122  CA  ILE   122      -9.615  -8.517  -5.125  1.00  5.00           C
ATOM    123  CA  PRO   123     -11.614 -11.569  -4.010  1.00  5.00           C
ATOM    124  CA  MET   124      -8.632 -13.749  -4.961  1.00  5.00           C
ATOM    125  CA  THR   125      -8.894 -15.441  -1.566  1.00  5.00           C
ATOM    126  CA  ALA   126     -12.000 -17.556  -0.891  1.00  5.00           C
ATOM    127  CA  ASN   127     -13.571 -15.904  -3.950  1.00  5.00           C
ATOM    128  CA  SER   128     -13.456 -19.316  -5.653  1.00  5.00           C
ATOM    129  CA  ARG   129     -16.839 -18.492  -7.211  1.00  5.00           C
ATOM    130  CA  SER   130     -15.470 -15.130  -8.383  1.00  5.00           C
ATOM    131  CA  MET   131     -18.643 -14.591 -10.431  1.00  5.00           C
ATOM    132  CA  ASN   132     -18.023 -18.054 -11.908  1.00  5.00           C
ATOM    133  CA  LEU   133     -18.811 -16.510 -15.307  1.00  5.00           C
ATOM    134  CA  SER   134     -15.783 -14.271 -14.695  1.00  5.00           C
ATOM    135  CA  ASN   135     -13.864 -17.560 -14.934  1.00  5.00           C
ATOM    136  CA  SER   136     -11.536 -15.851 -17.427  1.00  5.00           C
ATOM    137  CA  VAL   137     -11.083 -13.144 -14.777  1.00  5.00           C
ATOM    138  CA  ALA   138      -9.783 -16.051 -12.677  1.00  5.00           C
ATOM    139  CA  VAL   139      -7.164 -16.189 -15.447  1.00  5.00           C
ATOM    140  CA  THR   140      -5.135 -18.234 -12.947  1.00  5.00           C
ATOM    141  CA  VAL   141      -5.553 -15.205 -10.665  1.00  5.00           C
ATOM    142  CA  TYR   142      -3.908 -13.377 -13.582  1.00  5.00           C
ATOM    143  CA  GLU   143      -0.862 -15.573 -12.908  1.00  5.00           C
ATOM    144  CA  ALA   144      -0.940 -14.302  -9.312  1.00  5.00           C
ATOM    145  CA  TRP   145      -1.132 -10.731 -10.640  1.00  5.00           C
ATOM    146  CA  ARG   146       2.660 -10.697 -11.063  1.00  5.00           C
ATOM    147  CA  GLN   147       3.063 -11.904  -7.466  1.00  5.00           C
ATOM    148  CA  LEU   148       0.782  -9.079  -6.296  1.00  5.00           C
ATOM    149  CA  GLY   149       3.347  -7.948  -3.709  1.00  5.00           C
ATOM    150  CA  TYR   150       5.099  -7.945  -0.320  1.00  5.00           C
ATOM    151  CA  LYS   151       7.403 -10.652  -1.705  1.00  5.00           C
ATOM    152  CA  GLY   152       9.670  -7.950  -3.160  1.00  5.00           C
ATOM    153  CA  ALA   153       8.554  -9.046  -6.639  1.00  5.00           C
ATOM    154  CA  VAL   154       6.429  -5.878  -6.682  1.00  5.00           C
ATOM    155  CA  ASN   155       8.294  -2.550  -6.693  1.00  5.00           C
ATOM    156  CA  LEU   156       5.240  -0.754  -5.267  1.00  5.00           C
ATOM    157  CA  PRO   157       5.326   1.583  -8.282  1.00  5.00           C
ATOM    158  CA  GLU   158       7.817   0.206 -10.823  1.00  5.00           C
ATOM    159  CA  VAL   159       4.847  -0.141 -13.208  1.00  5.00           C
ATOM    160  CA  LYS   160       7.100  -2.087 -15.594  1.00  5.00           C
TER
END



