
PFRMAT TS
TARGET T0093
AUTHOR 5477-6509-1337
MODEL 3 UNREFINED
REMARK
REMARK   Work performed by Kai-Ming Ho, James R. Morris, Cai-Zhuang Wang,
REMARK                   Drena Dobbs, Tzu-Liang Chan, Young-Ok Im,
REMARK                   Josh Koch, Neil Voss
REMARK
REMARK   Acknowledgments to Amy Andreotti and Josh Lapan
REMARK
REMARK   Work supported by Pioneer Hi-Bred, by a Carver Foundation grant
REMARK     from Iowa State University, and a Laboratory Directed 
REMARK     Research and Development grant from Ames Laboratory, U.S.D.O.E.
REMARK
REMARK
METHOD   This structure is an ab initio prediction, made by annealing the 
METHOD   prediction using our coarse grained molecular dynamics model (two
METHOD   beads, one for the backbone and one for the side chain).  Hydrogen
METHOD   bonding assignments were made in order to bias the system toward
METHOD   the secondary structure prediction given by PHD.  Three different
METHOD   models were generated with this approach, using three different
METHOD   annealing schedules.
METHOD
METHOD   All atom models were generated using the MaxSprout Server (L. Holm,
METHOD   C. Sander (1991) J. Mol. Biol. 218:183-194), using the CA positions
METHOD   from the coarse grained model.  The resulting backbone is broken
METHOD   in a number of places, where the original CA only model was fully
METHOD   connected.  The "unrefined" model contains the original CA trace.
REMARK
REMARK
PARENT N/A
ATOM      1  CA  MET     1      -9.047   6.182  -1.578  1.00  5.00           C
ATOM      2  CA  LEU     2      -5.585   5.022  -0.470  1.00  5.00           C
ATOM      3  CA  ASP     3      -5.600   2.234  -3.074  1.00  5.00           C
ATOM      4  CA  ILE     4      -3.368   0.155  -0.783  1.00  5.00           C
ATOM      5  CA  VAL     5       0.000  -1.603  -1.126  1.00  5.00           C
ATOM      6  CA  LEU     6       1.077  -5.118  -0.107  1.00  5.00           C
ATOM      7  CA  TYR     7       4.647  -3.995  -0.851  1.00  5.00           C
ATOM      8  CA  GLU     8       5.652  -5.862   2.321  1.00  5.00           C
ATOM      9  CA  PRO     9       8.554  -7.187   0.229  1.00  5.00           C
ATOM     10  CA  GLU    10       7.806  -6.303  -3.406  1.00  5.00           C
ATOM     11  CA  ILE    11      10.715  -8.630  -4.228  1.00  5.00           C
ATOM     12  CA  PRO    12       9.101 -11.333  -2.074  1.00  5.00           C
ATOM     13  CA  GLN    13       8.557 -14.811  -3.545  1.00  5.00           C
ATOM     14  CA  ASN    14       6.199 -14.740  -6.543  1.00  5.00           C
ATOM     15  CA  THR    15       9.306 -14.847  -8.754  1.00  5.00           C
ATOM     16  CA  GLY    16      10.601 -18.141 -10.179  1.00  5.00           C
ATOM     17  CA  ASN    17      10.648 -19.707  -6.706  1.00  5.00           C
ATOM     18  CA  ILE    18      12.471 -16.545  -5.596  1.00  5.00           C
ATOM     19  CA  ILE    19      16.121 -17.203  -6.492  1.00  5.00           C
ATOM     20  CA  ARG    20      15.059 -17.656 -10.128  1.00  5.00           C
ATOM     21  CA  LEU    21      17.869 -15.304 -11.190  1.00  5.00           C
ATOM     22  CA  CYS    22      16.444 -12.866  -8.625  1.00  5.00           C
ATOM     23  CA  ALA    23      19.071 -10.338  -7.502  1.00  5.00           C
ATOM     24  CA  ASN    24      20.982 -11.405 -10.626  1.00  5.00           C
ATOM     25  CA  THR    25      23.517  -8.712  -9.690  1.00  5.00           C
ATOM     26  CA  GLY    26      23.930 -10.541  -6.385  1.00  5.00           C
ATOM     27  CA  PHE    27      24.597 -13.721  -8.386  1.00  5.00           C
ATOM     28  CA  ARG    28      27.770 -13.992  -6.284  1.00  5.00           C
ATOM     29  CA  LEU    29      25.538 -13.379  -3.251  1.00  5.00           C
ATOM     30  CA  HIS    30      27.008 -16.523  -1.668  1.00  5.00           C
ATOM     31  CA  LEU    31      23.828 -18.418  -2.591  1.00  5.00           C
ATOM     32  CA  ILE    32      21.914 -15.576  -0.913  1.00  5.00           C
ATOM     33  CA  GLU    33      20.926 -18.227   1.646  1.00  5.00           C
ATOM     34  CA  PRO    34      24.671 -18.921   1.852  1.00  5.00           C
ATOM     35  CA  LEU    35      25.904 -17.132   4.988  1.00  5.00           C
ATOM     36  CA  GLY    36      22.221 -16.607   5.891  1.00  5.00           C
ATOM     37  CA  PHE    37      23.258 -15.422   9.366  1.00  5.00           C
ATOM     38  CA  THR    38      25.836 -13.222   7.615  1.00  5.00           C
ATOM     39  CA  TRP    39      22.832 -11.826   5.723  1.00  5.00           C
ATOM     40  CA  ASP    40      21.378 -10.973   9.146  1.00  5.00           C
ATOM     41  CA  ASP    41      17.931 -11.370   7.559  1.00  5.00           C
ATOM     42  CA  LYS    42      19.151  -8.853   4.965  1.00  5.00           C
ATOM     43  CA  ARG    43      19.726  -6.556   7.956  1.00  5.00           C
ATOM     44  CA  LEU    44      16.031  -7.060   8.763  1.00  5.00           C
ATOM     45  CA  ARG    45      16.145  -3.933  10.933  1.00  5.00           C
ATOM     46  CA  ARG    46      17.591  -1.944   8.017  1.00  5.00           C
ATOM     47  CA  SER    47      14.717  -3.175   5.831  1.00  5.00           C
ATOM     48  CA  GLY    48      15.823  -0.612   3.230  1.00  5.00           C
ATOM     49  CA  LEU    49      15.733   2.061   5.949  1.00  5.00           C
ATOM     50  CA  ASP    50      12.102   1.060   6.555  1.00  5.00           C
ATOM     51  CA  TYR    51      11.655   1.651   2.812  1.00  5.00           C
ATOM     52  CA  HIS    52      12.804   5.178   3.704  1.00  5.00           C
ATOM     53  CA  GLU    53       9.938   5.087   6.221  1.00  5.00           C
ATOM     54  CA  PHE    54       7.780   4.214   3.198  1.00  5.00           C
ATOM     55  CA  ALA    55       9.128   7.437   1.665  1.00  5.00           C
ATOM     56  CA  GLU    56       7.507   9.146   4.665  1.00  5.00           C
ATOM     57  CA  ILE    57       4.328   7.338   3.578  1.00  5.00           C
ATOM     58  CA  LYS    58       4.864   9.174   0.277  1.00  5.00           C
ATOM     59  CA  ARG    59       4.667  12.291   2.469  1.00  5.00           C
ATOM     60  CA  HIS    60       3.754  14.173  -0.721  1.00  5.00           C
ATOM     61  CA  LYS    61       0.987  11.624  -1.357  1.00  5.00           C
ATOM     62  CA  THR    62      -0.367  12.213   2.161  1.00  5.00           C
ATOM     63  CA  PHE    63      -4.019  12.040   3.249  1.00  5.00           C
ATOM     64  CA  GLU    64      -6.714  14.736   3.106  1.00  5.00           C
ATOM     65  CA  ALA    65      -6.437  14.798  -0.687  1.00  5.00           C
ATOM     66  CA  PHE    66      -9.383  12.353  -0.863  1.00  5.00           C
ATOM     67  CA  LEU    67     -10.764  14.342  -3.811  1.00  5.00           C
ATOM     68  CA  GLU    68      -7.367  13.806  -5.464  1.00  5.00           C
ATOM     69  CA  SER    69      -7.936  10.090  -4.814  1.00  5.00           C
ATOM     70  CA  GLU    70      -6.571   9.358  -8.284  1.00  5.00           C
ATOM     71  CA  LYS    71      -3.594  11.608  -7.489  1.00  5.00           C
ATOM     72  CA  PRO    72      -1.208   8.837  -8.579  1.00  5.00           C
ATOM     73  CA  LYS    73      -2.891   5.433  -8.206  1.00  5.00           C
ATOM     74  CA  ARG    74      -0.477   4.831  -5.313  1.00  5.00           C
ATOM     75  CA  LEU    75      -1.918   7.950  -3.656  1.00  5.00           C
ATOM     76  CA  PHE    76      -2.369   5.748  -0.573  1.00  5.00           C
ATOM     77  CA  ALA    77      -2.189   7.695   2.703  1.00  5.00           C
ATOM     78  CA  LEU    78      -1.509   4.347   4.402  1.00  5.00           C
ATOM     79  CA  THR    79      -2.435   5.794   7.808  1.00  5.00           C
ATOM     80  CA  THR    80      -0.412   6.137  11.025  1.00  5.00           C
ATOM     81  CA  LYS    81       0.996   2.625  10.539  1.00  5.00           C
ATOM     82  CA  GLY    82      -1.052   1.424  13.525  1.00  5.00           C
ATOM     83  CA  CYS    83       0.217   4.466  15.446  1.00  5.00           C
ATOM     84  CA  PRO    84       2.117   2.088  17.739  1.00  5.00           C
ATOM     85  CA  ALA    85       5.300   2.690  15.723  1.00  5.00           C
ATOM     86  CA  HIS    86       7.192   0.573  18.271  1.00  5.00           C
ATOM     87  CA  SER    87       9.953   0.009  15.700  1.00  5.00           C
ATOM     88  CA  GLN    88       7.123  -0.998  13.348  1.00  5.00           C
ATOM     89  CA  VAL    89       6.300  -3.494  16.114  1.00  5.00           C
ATOM     90  CA  LYS    90       6.910  -6.250  13.570  1.00  5.00           C
ATOM     91  CA  PHE    91       4.205  -4.593  11.450  1.00  5.00           C
ATOM     92  CA  LYS    92       5.425  -6.758   8.555  1.00  5.00           C
ATOM     93  CA  LEU    93       3.707  -4.385   6.139  1.00  5.00           C
ATOM     94  CA  GLY    94       0.597  -4.571   8.342  1.00  5.00           C
ATOM     95  CA  ASP    95      -0.174  -7.987   6.828  1.00  5.00           C
ATOM     96  CA  TYR    96      -1.993  -6.237   3.968  1.00  5.00           C
ATOM     97  CA  LEU    97      -2.107  -2.473   3.352  1.00  5.00           C
ATOM     98  CA  MET    98      -5.265  -2.155   5.469  1.00  5.00           C
ATOM     99  CA  PHE    99      -4.017   1.194   6.805  1.00  5.00           C
ATOM    100  CA  GLY   100      -2.408  -0.792   9.637  1.00  5.00           C
ATOM    101  CA  PRO   101      -5.802  -2.464  10.129  1.00  5.00           C
ATOM    102  CA  GLU   102      -8.273  -0.175  11.923  1.00  5.00           C
ATOM    103  CA  THR   103     -11.112  -2.111  10.265  1.00  5.00           C
ATOM    104  CA  ARG   104     -13.210  -4.620  12.228  1.00  5.00           C
ATOM    105  CA  GLY   105     -15.448  -5.008   9.163  1.00  5.00           C
ATOM    106  CA  ILE   106     -15.670  -1.226   8.718  1.00  5.00           C
ATOM    107  CA  PRO   107     -15.299   0.021   5.132  1.00  5.00           C
ATOM    108  CA  MET   108     -11.677   1.051   4.523  1.00  5.00           C
ATOM    109  CA  SER   109     -12.932   3.548   1.926  1.00  5.00           C
ATOM    110  CA  ILE   110     -14.592   6.498   3.687  1.00  5.00           C
ATOM    111  CA  LEU   111     -11.867   5.987   6.308  1.00  5.00           C
ATOM    112  CA  ASN   112     -14.499   6.757   8.960  1.00  5.00           C
ATOM    113  CA  GLU   113     -15.623   9.839   7.013  1.00  5.00           C
ATOM    114  CA  MET   114     -11.949  10.849   6.814  1.00  5.00           C
ATOM    115  CA  PRO   115     -13.109  14.436   6.230  1.00  5.00           C
ATOM    116  CA  MET   116     -14.644  14.971   2.778  1.00  5.00           C
ATOM    117  CA  GLU   117     -17.988  15.593   4.507  1.00  5.00           C
ATOM    118  CA  GLN   118     -19.510  13.170   1.984  1.00  5.00           C
ATOM    119  CA  LYS   119     -17.885  15.286  -0.742  1.00  5.00           C
ATOM    120  CA  ILE   120     -17.921  12.232  -3.028  1.00  5.00           C
ATOM    121  CA  ARG   121     -21.588  12.922  -3.826  1.00  5.00           C
ATOM    122  CA  ILE   122     -21.806   9.444  -5.408  1.00  5.00           C
ATOM    123  CA  PRO   123     -18.634  10.211  -7.396  1.00  5.00           C
ATOM    124  CA  MET   124     -16.037   7.419  -7.525  1.00  5.00           C
ATOM    125  CA  THR   125     -18.613   4.991  -8.947  1.00  5.00           C
ATOM    126  CA  ALA   126     -20.869   2.687  -6.909  1.00  5.00           C
ATOM    127  CA  ASN   127     -22.360   1.572 -10.239  1.00  5.00           C
ATOM    128  CA  SER   128     -22.690   5.234 -11.236  1.00  5.00           C
ATOM    129  CA  ARG   129     -22.310   4.226 -14.896  1.00  5.00           C
ATOM    130  CA  SER   130     -24.971   1.570 -14.245  1.00  5.00           C
ATOM    131  CA  MET   131     -24.903  -1.074 -16.994  1.00  5.00           C
ATOM    132  CA  ASN   132     -21.720   0.646 -18.205  1.00  5.00           C
ATOM    133  CA  LEU   133     -20.250  -2.784 -18.987  1.00  5.00           C
ATOM    134  CA  SER   134     -21.455  -4.010 -15.581  1.00  5.00           C
ATOM    135  CA  ASN   135     -19.120  -6.993 -16.031  1.00  5.00           C
ATOM    136  CA  SER   136     -16.311  -4.472 -16.586  1.00  5.00           C
ATOM    137  CA  VAL   137     -17.345  -2.948 -13.245  1.00  5.00           C
ATOM    138  CA  ALA   138     -16.765  -6.454 -11.856  1.00  5.00           C
ATOM    139  CA  VAL   139     -13.186  -5.923 -13.065  1.00  5.00           C
ATOM    140  CA  THR   140     -13.321  -2.719 -10.997  1.00  5.00           C
ATOM    141  CA  VAL   141      -9.512  -2.795 -11.209  1.00  5.00           C
ATOM    142  CA  TYR   142      -8.326  -6.348 -11.934  1.00  5.00           C
ATOM    143  CA  GLU   143      -4.802  -4.888 -11.901  1.00  5.00           C
ATOM    144  CA  ALA   144      -3.842  -8.051  -9.997  1.00  5.00           C
ATOM    145  CA  TRP   145      -6.643  -7.162  -7.565  1.00  5.00           C
ATOM    146  CA  ARG   146      -5.062  -3.705  -7.245  1.00  5.00           C
ATOM    147  CA  GLN   147      -8.486  -2.285  -6.282  1.00  5.00           C
ATOM    148  CA  LEU   148     -10.875  -3.907  -3.788  1.00  5.00           C
ATOM    149  CA  GLY   149     -13.688  -2.995  -6.198  1.00  5.00           C
ATOM    150  CA  TYR   150     -14.357   0.151  -4.146  1.00  5.00           C
ATOM    151  CA  LYS   151     -14.572  -2.104  -1.076  1.00  5.00           C
ATOM    152  CA  GLY   152     -17.248  -4.113  -2.938  1.00  5.00           C
ATOM    153  CA  ALA   153     -19.445  -4.317   0.174  1.00  5.00           C
ATOM    154  CA  VAL   154     -18.578  -0.717   1.090  1.00  5.00           C
ATOM    155  CA  ASN   155     -21.395   1.746   1.833  1.00  5.00           C
ATOM    156  CA  LEU   156     -21.359   2.594  -1.887  1.00  5.00           C
ATOM    157  CA  PRO   157     -24.185   4.983  -0.960  1.00  5.00           C
ATOM    158  CA  GLU   158     -23.665   6.016   2.676  1.00  5.00           C
ATOM    159  CA  VAL   159     -21.318   8.732   1.384  1.00  5.00           C
ATOM    160  CA  LYS   160     -23.997   9.681  -1.161  1.00  5.00           C
TER
END


