
PFRMAT AL
TARGET T0094
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1bi5_A
L   26 I 236
M   27 F 237
E   28 E 238
L   30 M 239
R   31 V 240
S   32 W 241
T   35 T 242
G   36 A 243
P   37 Q 244
R   38 T 245
F   39 I 246
V   40 A 247
P   41 P 248
H   42 H 257
V   43 L 258
T   44 R 259
V   45 A 261
A   46 G 262
V   47 L 263
S   48 T 264
A   49 F 265
Y   50 H 266
L   51 L 267
T   52 L 268
A   53 T 280
D   54 K 281
E   55 A 282
A   56 L 283
K   57 V 284
K   58 E 285
M   59 A 286
F   60 F 287
E   61 E 288
S   62 P 289
A   63 L 290
G   66 G 291
L   67 I 292
K   68 S 293
A   69 D 294
Y   70 Y 295
T   71 S 297
A   72 I 298
T   73 F 299
V   74 W 300
D   75 I 301
R   76 A 302
V   77 H 303
S   78 P 304
T   79 G 305
G   80 G 306
T   81 P 307
F   82 A 308
F   83 I 309
F   84 L 310
Q   85 D 311
C   86 Q 312
V   87 V 313
F   88 E 314
L   89 Q 315
L   90 K 316
L   91 L 317
Q   92 A 318
T   93 L 319
T   94 K 320
P   95 P 321
E   96 E 322
V   97 K 323
M   98 M 324
E   99 N 325
A  100 A 326
G  101 T 327
E  102 R 328
H  103 E 329
C  104 V 330
K  105 L 331
N  106 S 332
H  107 E 333
F  108 Y 334
P  115 G 335
Y  116 N 336
M  117 M 337
P  118 S 338
H  119 S 339
L  120 A 340
S  121 C 341
L  122 V 342
L  123 L 343
Y  124 F 344
A  125 I 345
L  127 L 346
T  128 D 347
E  129 E 348
E  130 M 349
E  131 R 350
K  132 K 351
K  133 K 352
N  134 S 353
A  135 T 354
Q  136 Q 355
E  137 N 356
K  138 G 357
A  139 L 358
Y  140 K 359
T  141 T 360
L  142 T 361
D  143 G 362
S  144 E 363
S  145 G 364
L  146 L 365
D  147 E 366
G  148 G 374
L  149 P 375
S  150 G 376
F  151 L 377
R  152 T 378
L  153 I 379
N  154 E 380
R  155 T 381
L  156 V 382
A  157 V 383
L  158 L 384
C  159 R 385
K  160 S 386
T  161 V 387
D  162 A 388
T  163 I 389
TER
END

