
PFRMAT AL
TARGET T0094
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1fum_A
D   75 D 443
R   76 G 444
V   77 G 445
S   78 E 446
T   79 N 447
G   80 W 448
T   81 A 449
F   82 K 450
F   83 I 451
F   84 R 452
Q   85 D 453
C   86 E 454
V   87 M 455
F   88 G 456
L   89 L 457
L   90 A 458
L   91 M 459
Q   92 E 460
T   93 E 461
T   94 T 468
P   95 P 469
E   96 E 470
V   97 L 471
M   98 M 472
E   99 D 477
A  100 K 478
G  101 L 479
E  102 A 480
H  103 E 481
C  104 L 482
K  105 Q 483
N  106 E 484
H  107 R 485
F  108 F 486
N  109 K 487
C  110 R 490
S  111 I 491
T  112 T 492
T  113 D 493
T  114 T 494
P  115 S 495
Y  116 S 496
M  117 V 497
P  118 F 498
H  119 N 499
L  120 T 500
S  121 D 501
L  122 L 502
L  123 L 503
Y  124 Y 504
A  125 A 515
E  126 E 516
L  127 C 517
T  128 M 518
E  129 A 519
E  130 H 520
E  131 S 521
K  132 A 522
K  133 M 523
N  134 A 524
A  135 R 525
Q  136 K 526
E  137 E 527
K  138 A 531
A  139 H 532
Y  140 Q 533
T  141 R 534
L  142 L 535
D  143 D 536
S  144 E 537
S  145 G 538
L  146 C 539
D  147 D 543
G  148 D 544
L  149 V 545
S  150 N 546
F  151 F 547
N  154 L 548
R  155 K 549
L  156 H 550
A  157 T 551
L  158 L 552
C  159 A 553
K  160 F 554
T  161 R 555
D  162 D 556
T  163 A 557
E  164 D 558
D  165 G 559
K  166 T 560
T  167 T 561
L  168 R 562
E  169 L 563
T  170 E 564
W  171 Y 565
E  172 S 566
T  173 D 567
V  174 V 568
A  175 K 569
V  176 I 570
C  177 T 571
N  178 T 572
L  179 L 573
N  180 P 574
P  181 P 575
TER
END

