
PFRMAT AL
TARGET T0095
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1ycs_B
L 479    P 327
A 480    L 328
Q 481    A 329
E 482    L 330
N 483    L 331
M 484    L 332
D 485    D 333
L 486    S 334
F 487    S 335
K 488    L 336
E 489    E 337
Q 490    G 338
W 491    E 339
E 492    F 340
K 493    D 341
Q 494    L 342
V 495    V 343
R 496    Q 344
V 497    R 345
L 498    I 346
T 499    I 347
D 500    Y 348
A 501    E 349
V 502    V 350
D 503    D 351
D 504    D 352
T 506    P 353
S 507    S 354
I 508    L 355
D 509    P 356
D 510    N 357
F 511    D 358
L 512    E 359
A 513    G 360
V 514    I 361
S 515    T 362
E 516    A 363
N 517    L 364
H 518    H 365
I 519    N 366
L 520    A 367
E 521    V 368
D 522    C 369
V 523    A 370
K 533    F 378
D 534    L 379
V 535    V 380
D 536    Q 381
G 537    G 383
L 538    V 384
D 539    N 385
R 540    V 386
T 541    N 387
A 542    A 388
G 543    A 389
A 544    D 390
I 545    S 391
R 546    D 392
G 547    G 393
R 548    W 394
A 549    T 395
A 550    P 396
I 553    L 397
H 554    H 398
V 555    C 399
V 556    A 400
T 557    A 401
S 558    S 402
E 559    C 403
V 567    V 408
Y 568    C 409
K 571    K 410
V 572    F 411
L 573    L 412
E 574    V 413
A 575    E 414
T 576    S 415
K 577    G 416
L 578    A 417
L 579    A 418
S 580    V 419
N 581    F 420
V 583    A 421
M 584    M 422
P 585    T 423
R 586    Y 424
F 587    S 425
T 588    D 426
E 589    M 427
Q 590    Q 428
V 591    T 429
TER
END


