
PFRMAT AL
TARGET T0095
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1spa
D 539    E 234
R 540    E 235
T 541    D 236
A 542    A 237
G 543    E 238
A 544    G 239
I 545    L 240
R 546    R 241
G 547    A 242
R 548    F 243
A 549    A 244
A 550    A 245
R 551    K 248
V 552    E 249
I 553    L 250
H 554    I 251
V 555    V 252
V 556    A 253
T 557    S 254
S 558    S 255
E 559    Y 256
M 560    S 257
D 561    K 258
N 562    N 259
Y 563    F 260
G 566    G 261
V 567    L 262
Y 568    Y 263
T 569    N 264
E 570    E 265
K 571    R 266
V 572    V 267
L 573    G 268
E 574    A 269
A 575    C 270
T 576    T 271
K 577    L 272
L 578    V 273
L 579    A 274
S 580    A 275
N 581    D 276
T 582    S 277
V 583    T 279
M 584    V 280
P 585    D 281
R 586    R 282
F 587    A 283
T 588    F 284
E 589    S 285
Q 590    Q 286
V 591    M 287
E 592    K 288
A 593    A 289
A 594    A 290
V 595    I 291
E 596    R 292
A 597    A 293
L 598    Y 295
S 599    S 296
S 600    N 297
D 601    P 298
P 602    P 299
A 603    A 300
Q 604    H 301
F 611    T 308
I 612    I 309
D 613    D 313
A 614    A 314
S 615    L 315
R 616    R 316
L 617    A 317
V 618    I 318
Y 619    W 319
D 620    E 320
G 621    Q 321
I 622    L 323
R 623    T 324
D 624    D 325
I 625    M 326
R 626    R 327
K 627    Q 328
TER
END


