
PFRMAT SS
TARGET T0095
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
D C 0.99
H C 0.32
V E 0.30
S E 0.17
D C 0.02
S C 0.16
F H 0.14
L H 0.10
E C 0.18
T C 0.18
N H 0.12
V H 0.43
P H 0.65
L H 0.92
L H 0.95
V H 0.95
L H 0.96
I H 0.96
E H 0.94
A H 0.84
A H 0.50
K H 0.38
N C 0.41
G C 0.83
N C 0.77
E H 0.81
K H 0.90
E H 0.93
V H 0.94
K H 0.94
E H 0.94
Y H 0.96
A H 0.94
Q H 0.94
V H 0.93
F H 0.88
R H 0.85
E H 0.62
H H 0.59
A H 0.61
N H 0.49
K H 0.81
L H 0.94
I H 0.95
E H 0.96
V H 0.96
A H 0.97
N H 0.96
L H 0.92
A H 0.78
C H 0.29
S C 0.26
I C 0.52
S C 0.77
N C 0.86
N C 0.75
E H 0.15
E H 0.54
G H 0.86
V H 0.93
K H 0.96
L H 0.97
V H 0.98
R H 0.98
M H 0.97
S H 0.97
A H 0.96
S H 0.97
Q H 0.94
L H 0.94
E H 0.89
A H 0.75
L H 0.78
C H 0.18
P H 0.53
Q H 0.75
V H 0.83
I H 0.95
N H 0.96
A H 0.95
A H 0.95
L H 0.97
A H 0.95
L H 0.91
A H 0.59
A C 0.11
K C 0.91
P C 0.87
Q C 0.82
S C 0.35
K H 0.45
L H 0.75
A H 0.88
Q H 0.89
E H 0.87
N H 0.91
M H 0.95
D H 0.95
L H 0.95
F H 0.95
K H 0.95
E H 0.95
Q H 0.90
W H 0.91
E H 0.95
K H 0.89
Q H 0.95
V H 0.95
R H 0.90
V H 0.96
L H 0.96
T H 0.93
D H 0.88
A H 0.70
V H 0.44
D H 0.07
D C 0.13
I C 0.18
T C 0.60
S C 0.89
I H 0.63
D H 0.83
D H 0.89
F H 0.92
L H 0.94
A H 0.91
V H 0.88
S H 0.84
E H 0.94
N H 0.94
H H 0.91
I H 0.93
L H 0.94
E H 0.90
D H 0.82
V H 0.91
N H 0.87
K H 0.77
C H 0.88
V H 0.94
I H 0.91
A H 0.75
L H 0.86
Q H 0.67
E H 0.30
K C 0.20
D C 0.88
V H 0.51
D H 0.38
G H 0.54
L H 0.62
D H 0.55
R H 0.45
T H 0.52
A H 0.56
G H 0.62
A H 0.78
I H 0.85
R H 0.89
G H 0.92
R H 0.95
A H 0.95
A H 0.96
R H 0.98
V H 0.98
I H 0.98
H H 0.98
V H 0.96
V H 0.90
T H 0.82
S H 0.71
E H 0.36
M H 0.07
D C 0.21
N C 0.40
Y C 0.66
E C 0.80
P C 0.88
G C 0.14
V H 0.29
Y H 0.75
T H 0.90
E H 0.93
K H 0.95
V H 0.96
L H 0.96
E H 0.96
A H 0.96
T H 0.96
K H 0.93
L H 0.92
L H 0.88
S H 0.81
N H 0.52
T H 0.01
V H 0.10
M H 0.26
P H 0.38
R H 0.49
F H 0.67
T H 0.85
E H 0.89
Q H 0.96
V H 0.97
E H 0.97
A H 0.96
A H 0.92
V H 0.84
E H 0.63
A H 0.37
L H 0.12
S C 0.08
S C 0.43
D C 0.66
P C 0.60
A C 0.71
Q C 0.86
P C 0.37
M C 0.04
D C 0.03
E C 0.11
N C 0.21
E H 0.01
F H 0.27
I H 0.25
D H 0.35
A H 0.58
S H 0.76
R H 0.82
L H 0.84
V H 0.72
Y H 0.69
D H 0.53
G H 0.42
I H 0.84
R H 0.92
D H 0.91
I H 0.92
R H 0.89
K H 0.86
A H 0.73
V H 0.52
L C 0.29
M C 0.97
END

