
PFRMAT AL
TARGET T0095
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1pjr
K 414    K 390
E 415    E 391
V 416    I 392
K 417    K 393
E 418    D 394
Y 419    I 395
A 420    L 396
Q 421    A 397
V 422    Y 398
F 423    L 399
R 424    R 400
E 425    V 401
H 426    I 402
A 427    A 403
N 428    N 404
K 429    S 410
L 430    L 411
I 431    L 412
E 432    R 413
V 433    I 414
A 434    I 415
N 435    N 416
L 436    V 417
A 437    P 418
G 446    I 427
V 447    D 428
Q 456    L 441
L 457    F 442
E 458    E 443
A 459    A 444
L 460    L 445
C 461    G 446
P 462    E 447
Q 463    E 449
V 464    M 450
I 465    I 451
N 466    G 452
A 467    A 457
A 468    A 458
L 469    G 459
A 470    A 460
L 471    L 461
A 472    A 462
A 473    A 463
K 474    R 465
P 475    S 466
Q 476    Q 467
S 477    T 481
K 478    E 482
L 479    L 483
A 480    V 484
Q 481    E 485
E 482    E 486
N 483    V 487
M 484    L 488
D 485    D 489
L 486    K 490
F 487    Y 493
K 488    R 494
E 489    E 495
Q 490    M 496
W 491    L 497
E 492    K 498
K 493    A 499
Q 494    E 500
V 495    R 501
R 496    T 502
V 497    I 503
D 500    E 504
A 501    A 505
V 502    Q 506
D 503    S 507
D 504    R 508
I 505    L 509
T 506    E 510
S 507    N 511
I 508    L 512
D 509    D 513
D 510    E 514
F 511    F 515
L 512    L 516
A 513    S 517
V 514    V 518
S 515    T 519
E 516    K 520
N 517    H 521
L 520    F 522
E 521    E 523
D 522    N 524
V 523    V 525
N 524    D 528
K 525    K 529
C 526    S 530
V 527    L 531
I 528    I 532
A 529    A 533
L 530    F 534
Q 531    L 535
TER
END


