
PFRMAT AL
TARGET T0095
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1a38_A
R 424    A  13
E 425    E  14
H 426    Q  15
A 427    A  16
N 428    E  17
K 429    R  18
L 430    Y  19
I 431    D  20
E 432    D  21
V 433    M  22
A 434    A  23
A 437    A  24
C 438    C  25
S 439    M  26
I 440    K  27
S 441    S  28
N 442    V  29
N 443    T  30
E 444    E  31
E 445    Q  32
G 446    G  33
V 447    A  34
Q 456    L  43
L 457    L  44
E 458    S  45
A 459    V  46
L 460    A  47
C 461    Y  48
P 462    K  49
Q 463    N  50
V 464    V  51
I 465    V  52
N 466    G  53
A 467    A  54
A 468    R  60
L 469    V  61
A 470    V  62
L 471    S  63
A 472    S  64
A 473    I  65
K 474    E  66
P 475    Q  67
Q 481    E  73
E 482    K  74
N 483    K  75
M 484    Q  76
D 485    Q  77
L 486    M  78
F 487    A  79
K 488    R  80
E 489    E  81
Q 490    Y  82
W 491    R  83
E 492    E  84
K 493    K  85
Q 494    I  86
V 495    E  87
R 496    T  88
V 497    E  89
L 498    L  90
T 499    R  91
D 500    D  92
A 501    I  93
V 502    C  94
D 503    N  95
D 504    D  96
I 505    V  97
T 506    L  98
S 507    S  99
I 508    L 100
D 509    E 102
D 510    K 103
F 511    F 104
L 512    L 105
A 513    I 106
TER
END


