
PFRMAT AL
TARGET T0097
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.93 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1ftra2
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1ftr_A
G 123     G   150
C 124     E   151
L 125     F   152
P 126     I   153
A 127     V   154
Y 128     E   155
D 129     D   156
A 130     S   157
L 131     F   158
A 132     G   159
G 133     I   160
Q 134     T   161
F 135     Y   170
I 136     I   171
E 137     M   172
A 138     A   173
S 139     E   174
S 140     S   175
R 141     Q   176
E 142     P   177
A 143     A   178
R 144     G   179
Q 145     L   180
A 146     Q   181
I 147     A   182
L 148     A   183
K 149     E   184
Q 150     A   185
G 151     A   186
Q 152     V   187
D 153     D   188
G 154     A   189
L 155     I   190
S 156     K   191
G 157     G   192
V 158     V   193
K 159     E   194
E 160     G   195
T 161     A   196
D 162     Y   197
K 163     A   198
K 164     P   199
W 165     F   200
A 166     P   201
S 167     G   202
Q 168     G   203
Y 169     I   204
L 170     V   205
K 171     A   206
I 172     S   207
M 173     A   208
G 174     S   209
K 175     K   210
I 176     V   211
L 177     G   212
D 178     S   213
Q 179     K   214
G 180     Q   215
E 181     Y   216
D 182     D   217
F 183     F   218
P 184     L   219
A 185     P   220
S 186     A   221
E 187     S   222
L 188     T   223
A 189     N   224
E 196     D   225
N 197     A   226
K 198     Y   227
M 199     C   228
S 200     P   229
E 201     T   230
G 202     V   231
K 203     E   232
K 204     D   233
E 205     N   234
E 206     E   235
L 207     L   236
Q 208     P   237
R 209     E   238
S 210     G   239
L 211     V   240
N 212     K   241
I 213     C   242
L 214     V   243
T 215     Y   244
A 216     E   245
F 217     I   246
R 218     V   247
K 219     I   248
K 220     N   249
G 221     G   250
A 222     L   251
E 223     N   252
K 224     E   253
E 225     E   254
E 226     A   255
L 227     V   256
TER
END

