
PFRMAT AL
TARGET T0097
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1fad_A
Q 168    A  95
Y 169    Y  96
L 170    L  97
K 171    Q  98
I 172    V  99
M 173    A 100
G 174    F 101
K 175    D 102
I 176    I 103
L 177    V 104
D 178    N 107
Q 179    V 108
G 180    G 109
E 181    R 110
D 182    D 111
F 183    W 112
S 186    K 113
E 187    R 114
L 188    L 115
A 189    A 116
R 190    R 117
I 191    E 118
S 192    L 119
K 193    K 120
L 194    V 121
I 195    S 122
E 196    E 123
N 197    A 124
K 198    K 125
M 199    M 126
E 201    D 127
G 202    G 128
K 203    I 129
K 204    E 130
E 205    E 131
E 206    K 132
L 207    Y 133
Q 208    P 134
R 209    R 135
S 210    S 136
L 211    L 137
N 212    S 138
TER
END


