
PFRMAT SS
TARGET T0097
AUTHOR 6153-6797-7392
METHOD The nearest neighbour method based on the FFAS
METHOD profile-profile matching algorithm.
METHOD 
METHOD The FFAS sequence profile method is described in:
METHOD 
METHOD Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD "Comparison of sequence profiles. Strategies for structural
METHOD predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD The prototype of the secondary structure prediction
METHOD method is described in:
METHOD Rychlewski, L., and Godzik. A, (1997) 
METHOD "Secondary structure prediction using segment similarity", 
METHOD Protein Eng 10, 1143-1153 
METHOD 
METHOD The detailed description of the method will be a subject
METHOD of the separate publication.
METHOD 
MODEL 1
G C 0.56
C C 0.44
L H 0.67
P H 0.67
A H 0.78
Y H 0.89
D H 0.89
A H 0.89
L H 1.00
A H 0.89
G H 1.00
Q H 1.00
F H 1.00
I H 1.00
E H 0.89
A C 0.78
S C 0.89
S C 0.89
R H 0.89
E H 1.00
A H 1.00
R H 1.00
Q H 1.00
A H 1.00
I H 1.00
L H 1.00
K H 0.89
Q H 0.78
G H 0.78
Q H 0.89
D H 0.89
G H 0.89
L H 1.00
S H 0.89
G H 0.78
V H 0.78
K H 0.78
E H 0.78
T H 0.78
D H 0.67
K H 0.78
K H 0.67
W C 0.67
A C 0.67
S H 0.67
Q H 0.67
Y H 0.67
L H 0.67
K H 0.78
I H 0.78
M H 0.78
G H 0.78
K H 0.78
I H 0.78
L H 0.78
D H 0.67
Q C 0.78
G C 0.89
E C 0.78
D C 0.67
F C 0.67
P C 0.67
A H 0.67
S H 0.89
E H 0.89
L H 0.89
A H 1.00
R H 1.00
I H 1.00
S H 1.00
K H 1.00
L H 1.00
I H 1.00
E H 0.78
N H 0.56
K C 0.67
M C 0.78
S C 0.78
E C 0.78
G C 0.78
K C 0.67
K H 0.78
E H 1.00
E H 1.00
L H 1.00
Q H 0.89
R H 0.78
S H 0.78
L H 0.67
N H 0.78
I H 0.78
L H 0.78
T H 0.67
A H 0.78
F H 0.67
R H 0.67
K H 0.56
K C 0.67
G C 0.78
A C 0.56
E C 0.56
K H 0.78
E H 0.78
E H 0.78
L H 0.78
END
 - - - - - - - - - - - - - - - - - -
 Lukasz Jaroszewski, Ph. D.
 The Burnham Institute,
 10901 North Torrey Pines Road,
 La Jolla, CA 92037, USA
 phone +1 (858) 646 3100 ext. 3553
 fax  +1 (858) 646 3171
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