
PFRMAT AL
TARGET T0098
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1aoi_B
D  139 K 20
N  140 V 21
K  141 L 22
P  142 R 23
K  143 D 24
N  144 N 25
L  145 I 26
D  146 Q 27
A  147 P 32
S  148 A 33
I  149 I 34
T  150 R 35
S  151 R 36
I  152 L 37
I  153 A 38
H  154 R 39
E  155 R 40
I  156 G 41
G  157 G 42
V  158 V 43
P  159 K 44
H  161 R 45
I  162 I 46
K  163 S 47
G  164 G 48
Y  165 L 49
L  166 I 50
Y  167 Y 51
L  168 T 54
R  169 R 55
E  170 G 56
A  171 V 57
I  172 L 58
A  173 K 59
M  174 V 60
V  175 F 61
Y  176 L 62
H  177 E 63
D  178 N 64
I  179 V 65
L  181 I 66
L  182 R 67
G  183 D 68
S  184 A 69
I  185 V 70
T  186 T 71
Y  190 Y 72
P  191 T 73
D  192 E 74
I  193 H 75
A  194 A 76
K  195 K 77
K  196 R 78
Y  197 K 79
N  198 T 80
T  199 V 81
T  200 T 82
A  201 A 83
S  202 M 84
R  203 D 85
V  204 V 86
E  205 V 87
R  206 Y 88
A  207 A 89
I  208 L 90
R  209 K 91
H  210 R 92
A  211 Q 93
I  212 G 94
E  213 R 95
V  214 T 96
A  215 L 97
W  216 Y 98
S  217 G 99
R  218 F 100
G  219 G 101
N  220 G 102
TER
END

