
PFRMAT AL
TARGET T0098
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 2trt
D 139    K  46
N 140    N  47
K 141    K  48
P 142    R  49
K 143    A  50
N 144    L  51
L 145    L  52
D 146    D  53
A 147    A  54
S 148    L  55
I 149    A  56
T 150    V  57
S 151    E  58
I 152    I  59
I 153    L  60
H 154    H  64
E 155    D  65
I 156    Y  66
G 157    S  67
V 158    L  68
P 159    P  69
A 160    A  70
H 161    A  71
I 162    G  72
K 163    E  73
G 164    S  74
Y 165    W  75
L 166    Q  76
Y 167    S  77
L 168    F  78
R 169    L  79
E 170    R  80
A 171    N  81
I 172    N  82
A 173    A  83
M 174    M  84
V 175    S  85
Y 176    F  86
H 177    R  87
D 178    R  88
I 179    A  89
E 180    L  90
L 181    L  91
L 182    R  92
G 183    G  96
S 184    A  97
I 185    K  98
T 186    V  99
K 187    H 100
V 188    L 101
L 189    T 103
Y 190    R 104
P 191    P 105
D 192    D 106
A 194    E 107
K 195    K 108
K 196    Q 109
Y 197    Y 110
N 198    D 111
T 199    T 112
V 204    V 113
E 205    E 114
R 206    T 115
A 207    Q 116
I 208    L 117
R 209    R 118
H 210    F 119
A 211    M 120
I 212    T 121
E 213    E 122
V 214    N 123
A 215    G 124
W 216    F 125
S 217    S 126
R 218    R 128
G 219    D 129
N 220    G 130
L 221    L 131
E 222    Y 132
S 223    A 133
I 224    I 134
S 225    S 135
S 226    A 136
L 227    V 137
F 228    S 138
G 229    H 139
Y 230    F 140
T 231    T 141
V 232    L 142
S 233    G 143
A 237    A 144
K 238    V 145
P 239    L 146
T 240    E 147
N 241    Q 148
S 242    Q 149
E 243    E 150
F 244    H 151
I 245    T 152
A 246    A 153
M 247    A 154
TER
END


