
PFRMAT AL
TARGET T0098
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1bxm
T 200    T   4
A 201    A   5
S 202    T   6
R 203    Q   7
E 205    Q   8
R 206    T   9
A 207    A  10
I 208    A  11
R 209    Y  12
H 210    H  13
A 211    T  14
I 212    L  15
E 213    V  16
V 214    S  17
A 215    I  18
W 216    L  19
S 217    S  20
R 218    D  21
G 219    A  22
N 220    S  23
L 221    F  24
E 222    N  25
S 223    Q  26
I 224    C  27
S 225    S  28
S 226    T  29
L 227    D  30
F 228    S  31
G 229    G  32
Y 230    Y  33
T 231    S  34
V 232    M  35
S 233    L  36
V 234    T  37
S 235    A  38
K 236    K  39
A 237    A  40
K 238    L  41
P 239    P  42
T 240    T  43
N 241    T  44
S 242    A  45
E 243    Q  46
F 244    Y  47
I 245    K  48
A 246    L  49
M 247    M  50
V 248    C  51
A 249    A  52
D 250    S  53
TER
END


