
PFRMAT TS 
TARGET T0098
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For the given sequence and all sequence fragments with a length
METHOD of at least 15 residues decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using the energy function described in (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD The z scores of all the lowest energy structures were calculated.
METHOD The most stable 40-residue fragment was chosen for the prediction.
METHOD As a control secondary structure was predicted using NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
MODEL 1
PARENT 1sly
ATOM      1  N   LEU   189      -4.819  78.632  66.561  1.00  0.00          N
ATOM      2  CA  LEU   189      -3.690  79.091  67.384  1.00  0.00          C
ATOM      3  C   LEU   189      -2.521  78.104  67.400  1.00  0.00          C
ATOM      4  O   LEU   189      -1.356  78.475  67.521  1.00  0.00          O
ATOM      5  N   TYR   190      -2.816  76.826  67.168  1.00  0.00          N
ATOM      6  CA  TYR   190      -1.777  75.804  67.126  1.00  0.00          C
ATOM      7  C   TYR   190      -0.928  75.923  65.859  1.00  0.00          C
ATOM      8  O   TYR   190       0.310  75.900  65.894  1.00  0.00          O
ATOM      9  N   PRO   191      -1.621  76.086  64.738  1.00  0.00          N
ATOM     10  CA  PRO   191      -0.973  76.301  63.440  1.00  0.00          C
ATOM     11  C   PRO   191      -0.119  77.588  63.436  1.00  0.00          C
ATOM     12  O   PRO   191       1.079  77.610  63.118  1.00  0.00          O
ATOM     13  N   ASP   192      -0.744  78.665  63.922  1.00  0.00          N
ATOM     14  CA  ASP   192      -0.109  79.972  64.105  1.00  0.00          C
ATOM     15  C   ASP   192       1.035  79.863  65.093  1.00  0.00          C
ATOM     16  O   ASP   192       2.124  80.332  64.770  1.00  0.00          O
ATOM     17  N   ILE   193       0.912  79.170  66.224  1.00  0.00          N
ATOM     18  CA  ILE   193       2.051  79.102  67.142  1.00  0.00          C
ATOM     19  C   ILE   193       3.163  78.268  66.527  1.00  0.00          C
ATOM     20  O   ILE   193       4.324  78.654  66.643  1.00  0.00          O
ATOM     21  N   ALA   194       2.883  77.201  65.787  1.00  0.00          N
ATOM     22  CA  ALA   194       3.963  76.484  65.118  1.00  0.00          C
ATOM     23  C   ALA   194       4.660  77.327  64.066  1.00  0.00          C
ATOM     24  O   ALA   194       5.885  77.242  64.059  1.00  0.00          O
ATOM     25  N   LYS   195       3.991  78.196  63.280  1.00  0.00          N
ATOM     26  CA  LYS   195       4.690  79.076  62.305  1.00  0.00          C
ATOM     27  C   LYS   195       5.749  79.963  62.981  1.00  0.00          C
ATOM     28  O   LYS   195       6.921  79.949  62.616  1.00  0.00          O
ATOM     29  N   LYS   196       5.328  80.744  63.980  1.00  0.00          N
ATOM     30  CA  LYS   196       6.213  81.628  64.751  1.00  0.00          C
ATOM     31  C   LYS   196       7.374  80.871  65.415  1.00  0.00          C
ATOM     32  O   LYS   196       8.533  81.294  65.373  1.00  0.00          O
ATOM     33  N   TYR   197       7.057  79.721  65.988  1.00  0.00          N
ATOM     34  CA  TYR   197       8.058  78.898  66.595  1.00  0.00          C
ATOM     35  C   TYR   197       9.012  78.462  65.512  1.00  0.00          C
ATOM     36  O   TYR   197      10.191  78.660  65.716  1.00  0.00          O
ATOM     37  N   ASN   198       8.620  77.949  64.362  1.00  0.00          N
ATOM     38  CA  ASN   198       9.613  77.585  63.328  1.00  0.00          C
ATOM     39  C   ASN   198      10.439  78.797  62.879  1.00  0.00          C
ATOM     40  O   ASN   198      11.660  78.669  62.861  1.00  0.00          O
ATOM     41  N   THR   199       9.860  79.980  62.630  1.00  0.00          N
ATOM     42  CA  THR   199      10.594  81.228  62.281  1.00  0.00          C
ATOM     43  C   THR   199      11.386  81.886  63.444  1.00  0.00          C
ATOM     44  O   THR   199      11.905  83.005  63.348  1.00  0.00          O
ATOM     45  N   THR   200      11.454  81.201  64.572  1.00  0.00          N
ATOM     46  CA  THR   200      12.013  81.662  65.841  1.00  0.00          C
ATOM     47  C   THR   200      11.407  82.920  66.485  1.00  0.00          C
ATOM     48  O   THR   200      12.036  83.533  67.350  1.00  0.00          O
ATOM     49  N   ALA   201      10.185  83.346  66.190  1.00  0.00          N
ATOM     50  CA  ALA   201       9.621  84.509  66.876  1.00  0.00          C
ATOM     51  C   ALA   201       9.120  84.143  68.277  1.00  0.00          C
ATOM     52  O   ALA   201       7.912  84.108  68.608  1.00  0.00          O
ATOM     53  N   SER   202      10.104  83.979  69.150  1.00  0.00          N
ATOM     54  CA  SER   202       9.858  83.485  70.495  1.00  0.00          C
ATOM     55  C   SER   202       8.983  84.341  71.398  1.00  0.00          C
ATOM     56  O   SER   202       8.223  83.802  72.190  1.00  0.00          O
ATOM     57  N   ARG   203       8.978  85.658  71.229  1.00  0.00          N
ATOM     58  CA  ARG   203       8.022  86.579  71.896  1.00  0.00          C
ATOM     59  C   ARG   203       6.527  86.309  71.613  1.00  0.00          C
ATOM     60  O   ARG   203       5.669  86.424  72.491  1.00  0.00          O
ATOM     61  N   VAL   204       6.238  85.886  70.377  1.00  0.00          N
ATOM     62  CA  VAL   204       4.883  85.498  69.980  1.00  0.00          C
ATOM     63  C   VAL   204       4.574  84.106  70.613  1.00  0.00          C
ATOM     64  O   VAL   204       3.487  83.895  71.151  1.00  0.00          O
ATOM     65  N   GLU   205       5.516  83.147  70.635  1.00  0.00          N
ATOM     66  CA  GLU   205       5.329  81.797  71.236  1.00  0.00          C
ATOM     67  C   GLU   205       5.028  81.897  72.732  1.00  0.00          C
ATOM     68  O   GLU   205       4.020  81.373  73.230  1.00  0.00          O
ATOM     69  N   ARG   206       5.929  82.634  73.385  1.00  0.00          N
ATOM     70  CA  ARG   206       5.806  83.016  74.788  1.00  0.00          C
ATOM     71  C   ARG   206       4.379  83.486  75.107  1.00  0.00          C
ATOM     72  O   ARG   206       3.666  82.847  75.870  1.00  0.00          O
ATOM     73  N   ALA   207       3.906  84.530  74.445  1.00  0.00          N
ATOM     74  CA  ALA   207       2.522  84.994  74.567  1.00  0.00          C
ATOM     75  C   ALA   207       1.393  83.951  74.409  1.00  0.00          C
ATOM     76  O   ALA   207       0.385  83.893  75.124  1.00  0.00          O
ATOM     77  N   ILE   208       1.589  83.149  73.366  1.00  0.00          N
ATOM     78  CA  ILE   208       0.563  82.243  72.883  1.00  0.00          C
ATOM     79  C   ILE   208       0.324  80.890  73.524  1.00  0.00          C
ATOM     80  O   ILE   208      -0.836  80.452  73.571  1.00  0.00          O
ATOM     81  N   ARG   209       1.373  80.282  74.071  1.00  0.00          N
ATOM     82  CA  ARG   209       1.279  78.961  74.705  1.00  0.00          C
ATOM     83  C   ARG   209       0.303  78.636  75.844  1.00  0.00          C
ATOM     84  O   ARG   209      -0.417  77.627  75.774  1.00  0.00          O
ATOM     85  N   HIS   210       0.187  79.474  76.891  1.00  0.00          N
ATOM     86  CA  HIS   210      -0.734  79.276  78.016  1.00  0.00          C
ATOM     87  C   HIS   210      -2.191  79.215  77.590  1.00  0.00          C
ATOM     88  O   HIS   210      -3.028  78.672  78.305  1.00  0.00          O
ATOM     89  N   ALA   211      -2.505  79.785  76.434  1.00  0.00          N
ATOM     90  CA  ALA   211      -3.864  79.697  75.905  1.00  0.00          C
ATOM     91  C   ALA   211      -4.205  78.322  75.323  1.00  0.00          C
ATOM     92  O   ALA   211      -5.336  77.803  75.379  1.00  0.00          O
ATOM     93  N   ILE   212      -3.141  77.708  74.805  1.00  0.00          N
ATOM     94  CA  ILE   212      -3.216  76.384  74.210  1.00  0.00          C
ATOM     95  C   ILE   212      -3.177  75.253  75.240  1.00  0.00          C
ATOM     96  O   ILE   212      -3.235  74.074  74.878  1.00  0.00          O
ATOM     97  N   GLU   213      -3.177  75.629  76.525  1.00  0.00          N
ATOM     98  CA  GLU   213      -3.258  74.715  77.666  1.00  0.00          C
ATOM     99  C   GLU   213      -4.261  73.562  77.590  1.00  0.00          C
ATOM    100  O   GLU   213      -3.994  72.486  78.119  1.00  0.00          O
ATOM    101  N   VAL   214      -5.410  73.822  76.969  1.00  0.00          N
ATOM    102  CA  VAL   214      -6.488  72.838  76.798  1.00  0.00          C
ATOM    103  C   VAL   214      -6.648  72.181  75.412  1.00  0.00          C
ATOM    104  O   VAL   214      -7.641  71.503  75.128  1.00  0.00          O
ATOM    105  N   ALA   215      -5.699  72.416  74.519  1.00  0.00          N
ATOM    106  CA  ALA   215      -5.700  71.764  73.220  1.00  0.00          C
ATOM    107  C   ALA   215      -5.075  70.373  73.437  1.00  0.00          C
ATOM    108  O   ALA   215      -4.001  70.284  74.045  1.00  0.00          O
ATOM    109  N   TRP   216      -5.638  69.262  72.932  1.00  0.00          N
ATOM    110  CA  TRP   216      -5.072  67.907  73.010  1.00  0.00          C
ATOM    111  C   TRP   216      -3.580  67.748  72.833  1.00  0.00          C
ATOM    112  O   TRP   216      -2.926  67.031  73.572  1.00  0.00          O
ATOM    113  N   SER   217      -3.045  68.468  71.870  1.00  0.00          N
ATOM    114  CA  SER   217      -1.627  68.411  71.545  1.00  0.00          C
ATOM    115  C   SER   217      -0.724  69.332  72.372  1.00  0.00          C
ATOM    116  O   SER   217       0.479  69.367  72.101  1.00  0.00          O
ATOM    117  N   ARG   218      -1.181  70.035  73.415  1.00  0.00          N
ATOM    118  CA  ARG   218      -0.273  70.857  74.245  1.00  0.00          C
ATOM    119  C   ARG   218       0.930  70.089  74.834  1.00  0.00          C
ATOM    120  O   ARG   218       2.005  70.694  74.776  1.00  0.00          O
ATOM    121  N   GLY   219       0.947  68.802  75.288  1.00  0.00          N
ATOM    122  CA  GLY   219       2.176  68.084  75.692  1.00  0.00          C
ATOM    123  C   GLY   219       3.295  68.194  74.666  1.00  0.00          C
ATOM    124  O   GLY   219       4.451  68.404  75.028  1.00  0.00          O
ATOM    125  N   ASN   220       2.960  68.144  73.376  1.00  0.00          N
ATOM    126  CA  ASN   220       3.975  68.296  72.300  1.00  0.00          C
ATOM    127  C   ASN   220       4.700  69.661  72.235  1.00  0.00          C
ATOM    128  O   ASN   220       5.903  69.766  71.960  1.00  0.00          O
ATOM    129  N   LEU   221       3.949  70.721  72.507  1.00  0.00          N
ATOM    130  CA  LEU   221       4.522  72.044  72.575  1.00  0.00          C
ATOM    131  C   LEU   221       5.373  72.164  73.850  1.00  0.00          C
ATOM    132  O   LEU   221       6.512  72.658  73.778  1.00  0.00          O
ATOM    133  N   GLU   222       4.928  71.586  74.982  1.00  0.00          N
ATOM    134  CA  GLU   222       5.794  71.511  76.179  1.00  0.00          C
ATOM    135  C   GLU   222       7.081  70.697  75.925  1.00  0.00          C
ATOM    136  O   GLU   222       8.189  71.160  76.196  1.00  0.00          O
ATOM    137  N   SER   223       6.970  69.506  75.331  1.00  0.00          N
ATOM    138  CA  SER   223       8.100  68.678  74.867  1.00  0.00          C
ATOM    139  C   SER   223       9.079  69.443  73.943  1.00  0.00          C
ATOM    140  O   SER   223      10.305  69.330  74.061  1.00  0.00          O
ATOM    141  N   ILE   224       8.533  70.244  73.028  1.00  0.00          N
ATOM    142  CA  ILE   224       9.324  71.089  72.149  1.00  0.00          C
ATOM    143  C   ILE   224      10.066  72.136  72.977  1.00  0.00          C
ATOM    144  O   ILE   224      11.273  72.247  72.865  1.00  0.00          O
ATOM    145  N   SER   225       9.414  72.856  73.881  1.00  0.00          N
ATOM    146  CA  SER   225      10.075  73.864  74.715  1.00  0.00          C
ATOM    147  C   SER   225      11.233  73.290  75.545  1.00  0.00          C
ATOM    148  O   SER   225      12.326  73.861  75.551  1.00  0.00          O
ATOM    149  N   SER   226      11.002  72.122  76.172  1.00  0.00          N
ATOM    150  CA  SER   226      11.984  71.375  76.982  1.00  0.00          C
ATOM    151  C   SER   226      13.158  70.850  76.151  1.00  0.00          C
ATOM    152  O   SER   226      14.326  71.056  76.487  1.00  0.00          O
ATOM    153  N   LEU   227      12.897  70.160  75.053  1.00  0.00          N
ATOM    154  CA  LEU   227      14.016  69.733  74.218  1.00  0.00          C
ATOM    155  C   LEU   227      14.714  70.910  73.564  1.00  0.00          C
ATOM    156  O   LEU   227      15.889  70.792  73.247  1.00  0.00          O
ATOM    157  N   PHE   228      14.085  72.073  73.430  1.00  0.00          N
ATOM    158  CA  PHE   228      14.777  73.241  72.869  1.00  0.00          C
ATOM    159  C   PHE   228      15.929  73.732  73.741  1.00  0.00          C
ATOM    160  O   PHE   228      16.952  74.091  73.163  1.00  0.00          O
TER
END


