
PFRMAT AL
TARGET T0100
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1gpl
R 253    Q 292
E 254    E 293
S 255    S 294
D 256    G 295
S 257    C 296
V 258    F 297
P 259    P 298
A 260    C 299
K 261    P 300
S 262    A 301
Y 263    K 302
G 264    G 303
L 265    C 304
G 266    P 305
R 267    K 306
P 268    M 307
W 269    G 308
H 270    H 309
F 275    F 310
S 276    A 311
D 277    D 312
G 278    Q 313
R 279    Y 314
Y 280    P 315
A 281    G 316
D 282    K 317
P 283    T 318
N 284    N 319
A 285    A 320
I 286    V 321
G 287    E 322
Q 288    Q 323
T 289    T 324
V 290    F 325
F 291    F 326
L 292    L 327
N 293    N 328
T 294    T 329
S 295    G 330
M 296    A 331
D 297    S 332
N 298    D 333
H 299    N 334
I 300    F 335
Y 301    T 336
G 302    R 337
W 303    W 338
D 304    R 339
K 305    T 345
M 306    L 346
S 307    S 347
G 308    G 348
K 309    K 349
D 310    K 350
K 311    V 351
N 312    T 352
G 313    G 353
N 314    H 354
T 315    S 358
I 316    L 359
W 317    F 360
F 318    G 361
N 319    N 362
P 320    K 363
E 321    G 364
D 322    N 365
S 323    S 366
R 324    K 367
F 325    Q 368
F 326    Y 369
E 327    E 370
TER
END


