
PFRMAT AL
TARGET T0100
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1acx
Q 139    P   2
A 140    A   3
K 141    F   4
S 142    S   5
D 143    V   6
S 144    S   7
D 145    P   8
S 146    A   9
S 147    S  10
K 148    G  11
I 149    A  12
K 150    S  13
D 151    D  14
T 152    G  15
Q 153    Q  16
A 154    S  17
V 155    V  18
A 156    S  19
L 157    V  20
Y 158    S  21
V 159    V  22
T 160    A  23
K 161    A  24
S 162    A  25
G 163    G  26
D 164    E  27
R 165    T  28
A 166    Y  29
Y 167    Y  30
F 168    I  31
K 169    A  32
D 170    Q  33
V 171    C  34
S 172    A  35
L 173    P  36
V 174    V  37
G 175    G  38
Y 176    G  39
Q 177    Q  40
D 178    D  41
T 179    A  42
L 180    C  43
Y 181    N  44
V 182    P  45
S 183    A  46
G 184    T  47
G 185    A  48
R 186    T  49
S 187    S  50
F 188    F  51
F 189    T  52
S 190    T  53
D 191    D  54
C 192    A  55
S 195    S  56
G 196    G  57
T 197    A  58
V 198    A  59
D 199    S  60
F 200    F  61
I 201    S  62
F 202    F  63
TER
END


