
PFRMAT SS
TARGET T0100
AUTHOR 7770-2312-5826
REMARK GROUP NAME: SHESTOPALOV
REMARK GROUP LEADER: Shestopalov Boris V.
REMARK E-mail: shest@mail.cytspb.rssi.ru
METHOD Five models are possible in the category
METHOD "ab initio secondary structure prediction".
METHOD MODEL A and MODEL B are single sequence predictions.
METHOD MODEL A is obtained by DOUBLET CODE METHOD as model 3
METHOD in CASP3, with slightly modified code tables
METHOD (see CASP3, Shestopalov B.V., submitted).
METHOD MODEL B is obtained from MODEL A by transforming
METHOD ambiguous and undetermined regions into COIL.
METHOD MODELS C, D, E are multiple sequence predictions and
METHOD obtained by application of DOUBLET CODE METHOD
METHOD to a sequence alignment constructed using sequences
METHOD from BLAST2 (Gish W., http://blast.wustl.edu) and
METHOD PSI-BLAST (Altschul S.F., Madden T.L., Schaffer A.A.,
METHOD Zhang J., Zhang Z, Miller W & Lipman D.J. /1997/.
METHOD Nucl. Acid. Res. v. 25, pp 3389-3402)
METHOD and the DOUBLET CODE codons distributions for these
METHOD sequences.
METHOD The number 1 is assigned to the suggested best model.
METHOD The number 2 is always assigned to MODEL A.
METHOD Other details are described for each target specially.
MODEL  2
A C 0.00
T E 1.00
T E 1.00
Y E 1.00
N C 0.00
A C 0.00
V C 0.00
V C 0.00
S C 0.00
K C 1.00
S C 1.00
S C 1.00
S C 1.00
D C 1.00
G C 1.00
K C 1.00
T C 0.00
F E 1.00
K E 1.00
T E 1.00
I C 0.00
A C 0.00
D C 0.00
A C 0.00
I C 0.00
A C 0.00
S C 0.00
A C 0.00
P C 1.00
A C 1.00
G C 1.00
S C 1.00
T C 1.00
P C 1.00
F C 0.00
V E 1.00
I E 1.00
L E 1.00
I E 1.00
K C 1.00
N C 1.00
G C 1.00
V C 0.00
Y C 0.00
N C 0.00
E C 0.00
R C 0.00
L E 1.00
T E 1.00
I E 1.00
T E 1.00
R C 1.00
N C 1.00
N C 1.00
L E 1.00
H E 1.00
L E 1.00
K C 1.00
G C 1.00
E C 1.00
S C 1.00
R C 1.00
N C 1.00
G C 1.00
A C 0.00
V C 0.00
I C 0.00
A H 1.00
A H 1.00
A H 1.00
T H 1.00
A H 1.00
A C 0.00
G C 0.00
T C 0.00
L C 0.00
K C 0.00
S C 1.00
D C 1.00
G C 1.00
S C 1.00
K C 1.00
W C 1.00
G C 1.00
T C 1.00
A C 1.00
G C 1.00
S C 1.00
S C 1.00
T C 0.00
I E 1.00
T E 1.00
I E 1.00
S C 0.00
A C 0.00
K C 0.00
D C 0.00
F C 0.00
S C 0.00
A C 0.00
Q C 1.00
S C 1.00
L E 1.00
T E 1.00
I E 1.00
R C 1.00
N C 1.00
D C 1.00
F C 0.00
D C 0.00
F C 0.00
P C 1.00
A C 1.00
N C 1.00
Q C 1.00
A C 0.00
K C 1.00
S C 1.00
D C 1.00
S C 1.00
D C 1.00
S C 1.00
S C 1.00
K C 1.00
I C 0.00
K C 1.00
D C 1.00
T C 1.00
Q C 0.00
A C 0.00
V E 1.00
A E 1.00
L E 1.00
Y E 1.00
V E 1.00
T C 0.00
K C 1.00
S C 1.00
G C 1.00
D C 1.00
R C 1.00
A C 0.00
Y C 0.00
F C 0.00
K C 1.00
D C 1.00
V E 1.00
S E 1.00
L E 1.00
V E 1.00
G E 1.00
Y E 1.00
Q C 1.00
D C 1.00
T C 0.00
L E 1.00
Y E 1.00
V E 1.00
S C 1.00
G C 1.00
G C 1.00
R C 1.00
S C 1.00
F C 0.00
F C 0.00
S C 1.00
D C 1.00
C C 0.00
R C 0.00
I C 0.00
S C 1.00
G C 1.00
T C 1.00
V E 1.00
D E 1.00
F E 1.00
I E 1.00
F E 1.00
G C 1.00
D C 1.00
G C 1.00
T C 1.00
A C 0.00
L C 0.00
F C 0.00
N C 1.00
N C 1.00
C C 1.00
D C 1.00
L C 0.00
V C 0.00
S C 1.00
R C 1.00
Y C 0.00
R C 0.00
A C 1.00
D C 1.00
V C 0.00
K C 1.00
S C 1.00
G C 1.00
N C 1.00
V C 0.00
S C 1.00
G C 1.00
Y E 1.00
L E 1.00
T E 1.00
A C 1.00
P C 1.00
S C 1.00
T C 1.00
N C 1.00
I C 0.00
N C 1.00
Q C 1.00
K C 0.00
Y E 1.00
G E 1.00
L E 1.00
V E 1.00
I E 1.00
T C 0.00
N C 1.00
S C 1.00
R C 1.00
V C 0.00
I C 0.00
R C 0.00
E C 1.00
S C 1.00
D C 1.00
S C 1.00
V C 1.00
P C 1.00
A C 1.00
K C 1.00
S C 1.00
Y C 0.00
G C 0.00
L C 0.00
G C 1.00
R C 1.00
P C 1.00
W C 1.00
H C 1.00
P C 1.00
T C 0.00
T E 1.00
T E 1.00
F E 1.00
S C 1.00
D C 1.00
G C 1.00
R C 1.00
Y C 0.00
A C 1.00
D C 1.00
P C 1.00
N C 1.00
A C 0.00
I C 0.00
G C 1.00
Q C 1.00
T E 1.00
V E 1.00
F E 1.00
L E 1.00
N C 1.00
T C 1.00
S C 1.00
M C 0.00
D C 1.00
N C 1.00
H C 0.00
I C 0.00
Y C 0.00
G C 1.00
W C 1.00
D C 1.00
K C 1.00
M C 1.00
S C 1.00
G C 1.00
K C 1.00
D C 1.00
K C 1.00
N C 1.00
G C 1.00
N C 1.00
T C 1.00
I E 1.00
W E 1.00
F E 1.00
N C 1.00
P C 1.00
E C 1.00
D C 1.00
S C 1.00
R C 1.00
F C 0.00
F E 1.00
E E 1.00
Y E 1.00
K C 1.00
S C 1.00
Y C 0.00
G C 1.00
A C 1.00
G C 1.00
A C 1.00
A C 0.00
V C 0.00
S C 1.00
K C 1.00
D C 1.00
R C 1.00
R C 0.00
Q H 1.00
L H 1.00
T H 1.00
D H 1.00
A H 1.00
Q H 1.00
A H 1.00
A H 1.00
E H 1.00
Y C 0.00
T C 0.00
Q C 0.00
S C 0.00
K C 0.00
V C 0.00
L C 0.00
G C 1.00
D C 1.00
W C 1.00
T C 1.00
P C 1.00
T C 1.00
L C 1.00
P C 1.00
END

