
PFRMAT SS
TARGET T0100
AUTHOR 4746-4017-9845
REMARK Predictor remarks
METHOD SSTHREAD USING MULTI-DIMENSIONAL MEAN-FORCE POTENTIALS.
METHOD GIVEN SEQUENCES ARE THREADED TO THE STRUCTURE PROFILES
METHOD AND SECONDARY STRUCTURES OF THE 10 BEST SCORING TEMPLATE STRUCTURES
METHOD ARE ASIGNED TO THE GIVEN SEQUENCE
MODEL  1
A C 0.67
T C 0.90
T C 0.80
Y C 0.80
N C 0.80
A C 0.50
V E 0.50
V E 0.50
S C 0.50
K C 0.50
S C 0.70
S C 0.70
S C 0.70
D C 0.80
G C 0.80
K C 0.50
T C 0.50
F H 0.44
K E 0.33
T E 0.44
I H 0.50
A H 0.50
D H 0.60
A H 0.60
I H 0.60
A C 0.60
S C 0.60
A C 0.80
P C 0.80
A C 0.80
G C 0.90
S C 0.80
T C 0.70
P E 0.50
F E 0.70
V E 0.70
I E 0.70
L E 0.78
I E 0.44
K C 0.70
N C 0.60
G C 0.50
V C 0.50
Y H 0.40
N H 0.40
E H 0.50
R H 0.50
L H 0.50
T H 0.50
I E 0.40
T H 0.40
R C 0.50
N C 0.50
N C 0.40
L C 0.50
H E 0.60
L E 0.50
K C 0.70
G C 0.60
E C 0.90
S C 0.90
R C 0.90
N C 0.90
G E 0.50
A C 0.50
V C 0.50
I E 0.40
A C 0.40
A C 0.40
A C 0.50
T C 0.50
A C 0.60
A C 0.70
G C 0.50
T E 0.40
L E 0.40
K E 0.40
S C 0.50
D C 0.80
G C 0.80
S C 0.80
K C 0.78
W C 0.78
G E 0.44
T E 0.44
A C 0.44
G E 0.44
S E 0.56
S C 0.50
T C 0.50
I E 0.56
T E 0.56
I E 0.56
S E 0.56
A C 0.50
K C 0.50
D C 0.90
F C 0.70
S C 0.60
A C 0.50
Q E 0.40
S C 0.50
L C 0.44
T E 0.67
I E 0.44
R E 0.50
N C 0.90
D C 0.90
F C 0.70
D C 0.50
F C 0.50
P C 0.40
A C 0.44
N C 0.75
Q C 0.56
A C 0.44
K C 0.60
S C 0.70
D C 0.60
S C 0.67
D C 0.44
S C 0.56
S C 0.56
K C 0.56
I C 0.56
K C 0.70
D E 0.40
T E 0.40
Q C 0.44
A H 0.44
V E 0.44
A E 0.50
L E 0.38
Y E 0.38
V E 0.38
T E 0.50
K C 0.50
S C 0.62
G C 0.56
D C 0.40
R E 0.40
A E 0.50
Y E 0.50
F E 0.50
K E 0.50
D C 0.70
V C 0.70
S E 0.60
L E 0.60
V E 0.70
G E 0.40
Y C 0.50
Q C 0.60
D C 0.67
T C 0.89
L C 0.67
Y E 0.67
V E 0.67
S C 0.56
G C 0.67
G C 0.56
R C 0.60
S C 0.50
F E 0.50
F E 0.60
S E 0.60
D E 0.40
C C 0.50
R E 0.70
I E 0.50
S E 0.50
G C 0.60
T C 0.60
V C 0.80
D C 0.50
F E 0.40
I E 0.40
F E 0.50
G E 0.50
D E 0.40
G C 0.60
T C 0.50
A C 0.50
L E 0.60
F E 0.60
N E 0.60
N C 0.50
C C 0.50
D E 0.67
L E 0.78
V E 0.89
S E 0.56
R C 0.50
Y C 0.60
R C 0.50
A E 0.50
D E 0.50
V C 0.50
K C 0.44
S C 0.56
G C 0.67
N E 0.50
V E 0.50
S E 0.40
G C 0.50
Y C 0.50
L E 0.60
T E 0.50
A C 0.60
P C 0.60
S C 0.70
T C 0.70
N C 0.67
I C 0.56
N C 0.67
Q C 0.70
K C 0.60
Y C 0.50
G E 0.60
L E 0.67
V E 0.78
I E 0.78
T E 0.44
N H 0.40
S H 0.40
R H 0.40
V E 0.40
I C 0.40
R C 0.60
E C 0.70
S C 0.70
D C 0.70
S E 0.44
V E 0.44
P E 0.70
A E 0.70
K E 0.70
S E 0.60
Y E 0.60
G E 0.60
L E 0.60
G C 0.50
R C 0.70
P C 0.60
W C 0.70
H C 0.60
P C 0.70
T C 0.60
T E 0.70
T E 0.80
F E 0.60
S C 0.70
D C 0.70
G C 0.89
R C 0.78
Y C 0.67
A C 0.78
D C 0.67
P C 0.56
N C 0.56
A C 0.67
I C 0.67
G C 0.56
Q C 0.50
T E 0.50
V E 0.67
F E 0.56
L E 0.56
N E 0.44
T C 0.44
S C 0.44
M E 0.44
D H 0.44
N C 0.44
H C 0.44
I C 0.56
Y C 0.44
G C 0.50
W C 0.50
D C 0.50
K E 0.38
M E 0.38
S C 0.50
G C 0.67
K C 0.60
D C 0.60
K C 0.90
N C 0.90
G C 0.90
N C 0.70
T E 0.50
I E 0.60
W E 0.60
F E 0.50
N C 0.50
P C 0.70
E C 0.80
D C 0.89
S C 0.67
R C 0.56
F E 0.44
F E 0.44
E E 0.44
Y C 0.56
K C 0.78
S C 0.67
Y C 0.78
G C 0.78
A C 0.56
G C 0.56
A C 0.44
A C 0.44
V C 0.56
S C 0.78
K C 0.78
D C 0.56
R E 0.33
R E 0.33
Q H 0.44
L H 0.44
T H 0.44
D C 0.56
A C 0.56
Q C 0.56
A C 0.56
A C 0.56
E C 0.44
Y C 0.44
T C 0.44
Q C 0.50
S C 0.62
K C 0.62
V C 0.62
L C 0.62
G C 0.62
D C 0.75
W C 0.75
T C 0.71
P C 0.71
T C 0.57
L C 0.71
P C 0.71
END


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Adam Zemla, Ph.D.                              | E-mail: adamz@llnl.gov
Biology and Biotechnology Research Program     | Phone:  (925) 423-5571
Lawrence Livermore National Laboratory, L-448  | Fax:    (925) 422-2282
7000 East Ave., Livermore, CA 94550, USA       | Bldg: 3703, Room: 1047
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