
PFRMAT AL                                                                        
TARGET T0100                                                                     
REMARK =========================================================================
AUTHOR 6923-1755-6564                                                            
REMARK Ralf Zimmer, GMD-SCAI,                                                    
REMARK Theo Mevissen, GMD-SCAI,                                                  
REMARK Thomas Lengauer, GMD-SCAI,                                                
REMARK German National Research Center for Information Technology                
REMARK Institute for Algorithms and Scientific Computing                         
REMARK =========================================================================
METHOD A reduced candidate list is produced via ToPLign [1]                      
METHOD sequence/profile alignments, 123D [2] and RDP [3].                        
METHOD The top scoring candidates from this list and the                         
METHOD corresponding refined alignments have been produced                       
METHOD with RDP [3] using newly derived modifications of                         
METHOD contact capacity [2] and pair interaction potentials.                     
METHOD References:                                                               
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer:   
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign", 
METHOD     GMD, 1994-98.                                                         
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:                    
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment    
METHOD     and Contact Capacity Potentials",                                     
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publ. Co.,     
METHOD     1996, 53--72.                                                         
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:                      
METHOD     "Recursive Dynamic Programming for Adaptive Sequence                  
METHOD     and Structure Alignment",                                             
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.             
REMARK =========================================================================
MODEL  1                                                                         
PARENT 1BHE                                                                      
A  25    P     9                                                                 
T  26    K    10                                                                 
T  27    T    11                                                                 
Y  28    P    12                                                                 
N  29    S    13                                                                 
A  30    S    14                                                                 
V  31    C    15                                                                 
V  32    T    16                                                                 
S  33    T    17                                                                 
K  34    L    18                                                                 
S  35    K    19                                                                 
S  36    A    20                                                                 
S  37    D    21                                                                 
D  38    S    22                                                                 
G  39    S    23                                                                 
K  40    T    24                                                                 
T  41    A    25                                                                 
F  42    T    26                                                                 
K  43    S    27                                                                 
T  44    T    28                                                                 
I  45    I    29                                                                 
A  46    Q    30                                                                 
D  47    K    31                                                                 
A  48    A    32                                                                 
I  49    L    33                                                                 
A  50    N    34                                                                 
S  51    N    35                                                                 
A  52    C    36                                                                 
P  53    D    37                                                                 
A  54    Q    38                                                                 
G  55    G    39                                                                 
S  56    K    40                                                                 
T  57    A    41                                                                 
P  58    V    42                                                                 
F  59    R    43                                                                 
V  60    L    44                                                                 
I  61    S    45                                                                 
L  62    A    46                                                                 
I  63    G    47                                                                 
K  64    S    48                                                                 
N  65    T    49                                                                 
G  66    S    50                                                                 
V  67    V    51                                                                 
Y  68    F    52                                                                 
L  72    I   103                                                                 
T  73    T   104                                                                 
I  74    A   105                                                                 
T  75    V   106                                                                 
R  76    S   107                                                                 
N  77    T   108                                                                 
L  79    S   111                                                                 
H  80    G   112                                                                 
L  81    I   113                                                                 
V  90    L   137                                                                 
I  91    A   138                                                                 
A  92    A   139                                                                 
A  93    D   140                                                                 
A  94    A   141                                                                 
T  95    K   142                                                                 
A  96    V   143                                                                 
A  97    K   144                                                                 
G  98    K   145                                                                 
T  99    L   146                                                                 
L 100    K   147                                                                 
K 101    Q   148                                                                 
S 102    N   149                                                                 
D 103    T   150                                                                 
G 104    P   151                                                                 
S 105    R   152                                                                 
K 106    L   153                                                                 
W 107    I   154                                                                 
G 108    Q   155                                                                 
T 109    I   156                                                                 
A 110    N   157                                                                 
G 111    K   158                                                                 
S 112    S   159                                                                 
S 113    K   160                                                                 
T 114    N   161                                                                 
I 115    F   162                                                                 
T 116    T   163                                                                 
I 117    L   164                                                                 
S 118    Y   165                                                                 
F 122    F   185                                                                 
S 123    T   186                                                                 
A 124    A   187                                                                 
Q 125    W   188                                                                 
S 126    K   189                                                                 
L 127    T   190                                                                 
T 128    T   191                                                                 
I 129    I   192                                                                 
R 130    K   193                                                                 
N 131    T   194                                                                 
S 142    T   197                                                                 
D 143    A   198                                                                 
S 144    R   199                                                                 
D 145    N   200                                                                 
S 146    T   201                                                                 
S 147    D   202                                                                 
K 148    G   203                                                                 
I 149    I   204                                                                 
V 155    A   215                                                                 
A 156    Y   216                                                                 
L 157    S   217                                                                 
Y 158    N   218                                                                 
V 159    I   219                                                                 
R 165    K   229                                                                 
A 166    A   230                                                                 
Y 167    Y   231                                                                 
F 168    K   232                                                                 
K 169    G   233                                                                 
D 170    R   234                                                                 
V 171    A   235                                                                 
S 172    E   236                                                                 
L 173    T   237                                                                 
V 174    R   238                                                                 
G 175    N   239                                                                 
Y 176    I   240                                                                 
Q 177    S   241                                                                 
D 178    I   242                                                                 
T 179    L   243                                                                 
L 180    H   244                                                                 
Y 181    N   245                                                                 
V 182    D   246                                                                 
S 183    F   247                                                                 
G 184    G   248                                                                 
G 185    T   249                                                                 
R 186    G   250                                                                 
S 187    H   251                                                                 
F 188    G   252                                                                 
F 189    M   253                                                                 
S 190    S   254                                                                 
D 191    I   255                                                                 
C 192    G   256                                                                 
R 193    S   257                                                                 
I 194    E   258                                                                 
S 195    T   259                                                                 
G 196    M   260                                                                 
T 197    G   261                                                                 
V 198    V   262                                                                 
D 199    Y   263                                                                 
F 200    N   264                                                                 
I 201    V   265                                                                 
F 202    T   266                                                                 
G 203    V   267                                                                 
D 204    D   268                                                                 
G 205    D   269                                                                 
T 206    L   270                                                                 
A 207    K   271                                                                 
L 208    M   272                                                                 
F 209    N   273                                                                 
N 210    G   274                                                                 
N 211    T   275                                                                 
C 212    T   276                                                                 
D 213    N   277                                                                 
L 214    G   278                                                                 
V 215    L   279                                                                 
S 216    R   280                                                                 
R 217    I   281                                                                 
Y 218    K   282                                                                 
R 219    S   283                                                                 
A 220    D   284                                                                 
D 221    K   285                                                                 
V 222    S   286                                                                 
K 223    A   287                                                                 
S 224    A   288                                                                 
G 225    G   289                                                                 
N 226    V   290                                                                 
V 227    V   291                                                                 
S 228    N   292                                                                 
G 229    G   293                                                                 
Y 230    V   294                                                                 
L 231    R   295                                                                 
T 232    Y   296                                                                 
A 233    S   297                                                                 
P 234    N   298                                                                 
S 235    V   299                                                                 
T 236    V   300                                                                 
N 237    M   301                                                                 
I 238    K   302                                                                 
N 239    N   303                                                                 
Q 240    V   304                                                                 
K 241    A   305                                                                 
Y 242    K   306                                                                 
G 243    P   307                                                                 
L 244    I   308                                                                 
V 245    V   309                                                                 
I 246    I   310                                                                 
T 247    D   311                                                                 
N 248    T   312                                                                 
S 249    V   313                                                                 
R 250    Y   314                                                                 
V 251    E   315                                                                 
I 252    K   316                                                                 
R 253    K   317                                                                 
E 254    E   318                                                                 
S 255    G   319                                                                 
D 256    S   320                                                                 
S 257    N   321                                                                 
V 258    V   322                                                                 
P 259    P   323                                                                 
A 260    D   324                                                                 
K 261    W   325                                                                 
S 262    S   326                                                                 
Y 263    D   327                                                                 
G 264    I   328                                                                 
L 265    T   329                                                                 
G 266    F   330                                                                 
R 267    K   331                                                                 
P 268    D   332                                                                 
W 269    V   333                                                                 
H 270    T   334                                                                 
P 271    S   335                                                                 
T 272    E   336                                                                 
T 273    T   337                                                                 
T 289    V   341                                                                 
V 290    V   342                                                                 
F 291    L   343                                                                 
L 292    N   344                                                                 
N 293    G   345                                                                 
T 294    E   346                                                                 
S 295    N   347                                                                 
M 296    A   348                                                                 
D 297    K   349                                                                 
N 298    K   350                                                                 
H 299    P   351                                                                 
I 300    I   352                                                                 
Y 301    E   353                                                                 
T 315    N   358                                                                 
I 316    V   359                                                                 
W 317    K   360                                                                 
F 318    L   361                                                                 
N 319    T   362                                                                 
P 320    S   363                                                                 
E 321    D   364                                                                 
D 322    S   365                                                                 
S 323    T   366                                                                 
R 324    W   367                                                                 
F 325    Q   368                                                                 
F 326    I   369                                                                 
W 361    V   374                                                                 
T 362    K   375                                                                 
P 363    K   376                                                                 
TER                                                                              
END                                                                              




