
PFRMAT AL
TARGET T0102
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1ctf
E    4 E 53
F    5 F 54
G    6 D 55
I    7 V 56
V   15 I 57
L   16 L 58
N   17 K 59
V   18 A 60
A   21 A 61
G   22 G 62
G   23 A 63
W   24 N 64
V   25 K 65
T   26 V 66
T   27 A 67
I   28 V 68
V   29 I 69
S   30 K 70
I   31 A 71
L   32 V 72
T   33 R 73
A   34 A 75
V   35 T 76
G   36 G 77
S   37 L 78
G   38 G 79
G   39 A 83
L   40 K 84
S   41 D 85
L   42 L 86
L   43 V 87
A   44 E 88
A   45 S 89
A   46 A 90
G   47 S 99
R   48 K 100
E   49 D 101
S   50 D 102
I   51 A 103
K   52 E 104
A   53 A 105
L   55 L 106
K   56 K 107
K   57 K 108
E   58 A 109
I   59 L 110
K   60 E 111
K   61 E 112
K   62 A 113
G   63 G 114
K   64 A 115
R   65 E 116
A   66 V 117
V   67 E 118
I   68 V 119
A   69 K 120
TER
END

