
PFRMAT AL
TARGET T0102
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1lea
M    1 M 1
A    2 K 2
K    3 A 3
E    4 L 4
F    5 T 5
G    6 A 6
I    7 R 7
P    8 Q 8
A    9 Q 9
A   10 E 10
V   11 V 11
A   12 F 12
G   13 D 13
T   14 L 14
V   15 I 15
L   16 R 16
N   17 D 17
V   18 H 18
V   19 I 19
E   20 S 20
A   21 Q 21
G   22 T 22
G   23 G 23
W   24 M 24
V   25 P 25
T   26 P 26
T   27 T 27
I   28 R 28
V   29 A 29
S   30 E 30
I   31 I 31
L   32 A 32
T   33 Q 33
A   34 R 34
V   35 L 35
G   36 G 36
S   37 F 37
G   38 R 38
G   39 S 39
L   40 P 40
S   41 N 41
L   42 A 42
L   43 A 43
R   48 E 44
E   49 E 45
S   50 H 46
I   51 L 47
K   52 K 48
A   53 A 49
Y   54 L 50
L   55 A 51
K   56 R 52
K   57 K 53
E   58 G 54
I   59 E 57
K   60 I 58
K   61 V 59
K   62 S 60
G   63 G 61
K   64 A 62
R   65 S 63
A   66 R 64
V   67 G 65
I   68 I 66
A   69 R 67
TER
END

