
PFRMAT AL
TARGET T0102
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1af7
G   6    A  21
I   7    L  22
P   8    S  23
A   9    D  24
A  10    A  25
V  11    H  26
A  12    F  27
G  13    R  28
T  14    R  29
V  15    I  30
L  16    C  31
N  17    Q  32
V  18    L  33
V  19    I  34
E  20    Y  35
A  21    Q  36
G  22    R  37
G  23    A  38
W  24    G  39
V  25    I  40
T  26    V  41
T  27    L  42
I  28    A  43
V  29    D  44
S  30    H  45
I  31    K  46
L  32    R  47
T  33    D  48
A  34    M  49
V  35    V  50
G  36    Y  51
S  37    N  52
G  38    R  53
G  39    L  54
L  40    V  55
S  41    R  56
L  42    R  57
L  43    L  58
A  44    R  59
A  45    A  60
A  46    L  61
G  47    G  62
R  48    L  63
E  49    D  64
S  50    D  65
I  51    F  66
K  52    G  67
A  53    R  68
Y  54    Y  69
L  55    L  70
K  56    S  71
K  57    M  72
E  58    L  73
I  59    E  74
K  60    A  75
K  61    Q  77
K  62    N  78
G  63    S  79
K  64    W  82
R  65    Q  83
A  66    A  84
TER
END


